miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 3' -62.7 NC_001806.1 + 1622 0.66 0.586505
Target:  5'- -cGCCCaGGCcccaGCgCGCGCAGGcgGcGUGCGa -3'
miRNA:   3'- gaCGGG-CUG----CG-GCGCGUCCa-C-CACGU- -5'
5551 3' -62.7 NC_001806.1 + 1749 0.7 0.3796
Target:  5'- -gGCCCGGCGguacUCGCGCGGGgacaUGG-GCAc -3'
miRNA:   3'- gaCGGGCUGC----GGCGCGUCC----ACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 2425 0.68 0.500524
Target:  5'- -gGCCCGAgG-CGCGCAGG-GG-GCc -3'
miRNA:   3'- gaCGGGCUgCgGCGCGUCCaCCaCGu -5'
5551 3' -62.7 NC_001806.1 + 3037 0.69 0.42056
Target:  5'- gCUGgCCGcCGCCGCcaGCAGGgGGcGCAg -3'
miRNA:   3'- -GACgGGCuGCGGCG--CGUCCaCCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 3718 0.68 0.504239
Target:  5'- -cGCCaacaggggcgcguaGGCGCgGCGCAGGcUGGUcaGCAg -3'
miRNA:   3'- gaCGGg-------------CUGCGgCGCGUCC-ACCA--CGU- -5'
5551 3' -62.7 NC_001806.1 + 4752 0.66 0.625746
Target:  5'- -gGCCCGGuCGCCG-GCGGcGUcGGcUGCGu -3'
miRNA:   3'- gaCGGGCU-GCGGCgCGUC-CA-CC-ACGU- -5'
5551 3' -62.7 NC_001806.1 + 6056 0.69 0.403856
Target:  5'- gUGCCCGACuCCGCGCcGGccccgGGgGCGg -3'
miRNA:   3'- gACGGGCUGcGGCGCGuCCa----CCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 20100 0.67 0.538178
Target:  5'- gUGgCCGGCGCCGUcuGCGGGcgucGGUcGCGc -3'
miRNA:   3'- gACgGGCUGCGGCG--CGUCCa---CCA-CGU- -5'
5551 3' -62.7 NC_001806.1 + 22058 0.76 0.166633
Target:  5'- -gGCCCGGCGCCGgGCccccgcccccGGGgcgGGUGCu -3'
miRNA:   3'- gaCGGGCUGCGGCgCG----------UCCa--CCACGu -5'
5551 3' -62.7 NC_001806.1 + 22773 0.68 0.473063
Target:  5'- -cGCCgGGCGCCGCGCccAGGccGGccGCGu -3'
miRNA:   3'- gaCGGgCUGCGGCGCG--UCCa-CCa-CGU- -5'
5551 3' -62.7 NC_001806.1 + 24274 0.66 0.596285
Target:  5'- gCUGCCCGccgugcaguGCGCCGUGCGcuggccGGcGGcGCGg -3'
miRNA:   3'- -GACGGGC---------UGCGGCGCGU------CCaCCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 24654 0.66 0.567042
Target:  5'- -gGCCCGuguacgugGCGCUgggGCGCgAGGcGGUGCGc -3'
miRNA:   3'- gaCGGGC--------UGCGG---CGCG-UCCaCCACGU- -5'
5551 3' -62.7 NC_001806.1 + 30384 0.66 0.60609
Target:  5'- gUGCCgGGCG-CGUGCGacGGUGGcGCGc -3'
miRNA:   3'- gACGGgCUGCgGCGCGU--CCACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 35565 0.71 0.311518
Target:  5'- -cGCCCGGCGCCGCGCcgaacgacGUGCGc -3'
miRNA:   3'- gaCGGGCUGCGGCGCGuccac---CACGU- -5'
5551 3' -62.7 NC_001806.1 + 41422 0.68 0.473063
Target:  5'- cCUGCCCagcGCGCCGUGgucGG-GGUGCGc -3'
miRNA:   3'- -GACGGGc--UGCGGCGCgu-CCaCCACGU- -5'
5551 3' -62.7 NC_001806.1 + 44454 0.71 0.334101
Target:  5'- -gGCCCGGCGuCCGCGUggagcaugcggaGGGaUGGcUGCAc -3'
miRNA:   3'- gaCGGGCUGC-GGCGCG------------UCC-ACC-ACGU- -5'
5551 3' -62.7 NC_001806.1 + 44652 0.66 0.615912
Target:  5'- -cGCCCucGGCGUCGCGCcGGUaGG-GCc -3'
miRNA:   3'- gaCGGG--CUGCGGCGCGuCCA-CCaCGu -5'
5551 3' -62.7 NC_001806.1 + 50556 0.66 0.600204
Target:  5'- gCUGCUCGccaacagcgggcucaACGCCGUGCuGGgcgcugcGGUGUAc -3'
miRNA:   3'- -GACGGGC---------------UGCGGCGCGuCCa------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 51582 0.66 0.60609
Target:  5'- -cGCCacccaGGCGCUGgGCgAGGUGGaGCu -3'
miRNA:   3'- gaCGGg----CUGCGGCgCG-UCCACCaCGu -5'
5551 3' -62.7 NC_001806.1 + 52587 0.66 0.615912
Target:  5'- -gGCCCGGgGgggcaUCGCGCGGGgGGUGgGa -3'
miRNA:   3'- gaCGGGCUgC-----GGCGCGUCCaCCACgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.