miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 3' -62.7 NC_001806.1 + 151265 0.67 0.519216
Target:  5'- -gGCCC-ACGCCGgGC-GGUGGggGCc -3'
miRNA:   3'- gaCGGGcUGCGGCgCGuCCACCa-CGu -5'
5551 3' -62.7 NC_001806.1 + 67214 0.67 0.519216
Target:  5'- -gGCCUGGCGgggCGCGCuGGUGG-GCc -3'
miRNA:   3'- gaCGGGCUGCg--GCGCGuCCACCaCGu -5'
5551 3' -62.7 NC_001806.1 + 100796 0.67 0.518275
Target:  5'- -cGCCCcucgcgaGACGCCgGCGaCAGGUGGcgaaaggGCGc -3'
miRNA:   3'- gaCGGG-------CUGCGG-CGC-GUCCACCa------CGU- -5'
5551 3' -62.7 NC_001806.1 + 3718 0.68 0.504239
Target:  5'- -cGCCaacaggggcgcguaGGCGCgGCGCAGGcUGGUcaGCAg -3'
miRNA:   3'- gaCGGg-------------CUGCGgCGCGUCC-ACCA--CGU- -5'
5551 3' -62.7 NC_001806.1 + 145026 0.68 0.500524
Target:  5'- -gGCCCGGCGCaUGCGCuguGGUuuuuuuuuccucGGUGUu -3'
miRNA:   3'- gaCGGGCUGCG-GCGCGu--CCA------------CCACGu -5'
5551 3' -62.7 NC_001806.1 + 2425 0.68 0.500524
Target:  5'- -gGCCCGAgG-CGCGCAGG-GG-GCc -3'
miRNA:   3'- gaCGGGCUgCgGCGCGUCCaCCaCGu -5'
5551 3' -62.7 NC_001806.1 + 133055 0.68 0.481224
Target:  5'- cCUGCCCuGCGCUGCGgCagcuccuGGGUGGgGUAa -3'
miRNA:   3'- -GACGGGcUGCGGCGC-G-------UCCACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 128047 0.68 0.473063
Target:  5'- aUGCCCGugGCgGCcacggccccCAGGUGGggGCc -3'
miRNA:   3'- gACGGGCugCGgCGc--------GUCCACCa-CGu -5'
5551 3' -62.7 NC_001806.1 + 41422 0.68 0.473063
Target:  5'- cCUGCCCagcGCGCCGUGgucGG-GGUGCGc -3'
miRNA:   3'- -GACGGGc--UGCGGCGCgu-CCaCCACGU- -5'
5551 3' -62.7 NC_001806.1 + 22773 0.68 0.473063
Target:  5'- -cGCCgGGCGCCGCGCccAGGccGGccGCGu -3'
miRNA:   3'- gaCGGgCUGCGGCGCG--UCCa-CCa-CGU- -5'
5551 3' -62.7 NC_001806.1 + 76283 0.68 0.455184
Target:  5'- cCUGgCCGcCGCCGCGgAGGagauauccgcGGUGCGc -3'
miRNA:   3'- -GACgGGCuGCGGCGCgUCCa---------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 100387 0.69 0.446382
Target:  5'- -cGCCgGGCGgCGCGgGGGccggGGUGCc -3'
miRNA:   3'- gaCGGgCUGCgGCGCgUCCa---CCACGu -5'
5551 3' -62.7 NC_001806.1 + 139112 0.69 0.437676
Target:  5'- gCUGaCCGGCucGCCGCGCGGG-GG-GCu -3'
miRNA:   3'- -GACgGGCUG--CGGCGCGUCCaCCaCGu -5'
5551 3' -62.7 NC_001806.1 + 106543 0.69 0.437676
Target:  5'- -gGUgCGAUGCCGCGCuGGUGcGcGCGc -3'
miRNA:   3'- gaCGgGCUGCGGCGCGuCCAC-CaCGU- -5'
5551 3' -62.7 NC_001806.1 + 3037 0.69 0.42056
Target:  5'- gCUGgCCGcCGCCGCcaGCAGGgGGcGCAg -3'
miRNA:   3'- -GACgGGCuGCGGCG--CGUCCaCCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 145720 0.69 0.412155
Target:  5'- -gGCCC-ACcugGCCGCGCGGGUGcgcGUGCc -3'
miRNA:   3'- gaCGGGcUG---CGGCGCGUCCAC---CACGu -5'
5551 3' -62.7 NC_001806.1 + 6056 0.69 0.403856
Target:  5'- gUGCCCGACuCCGCGCcGGccccgGGgGCGg -3'
miRNA:   3'- gACGGGCUGcGGCGCGuCCa----CCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 1749 0.7 0.3796
Target:  5'- -gGCCCGGCGguacUCGCGCGGGgacaUGG-GCAc -3'
miRNA:   3'- gaCGGGCUGC----GGCGCGUCC----ACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 53874 0.71 0.3414
Target:  5'- gCUGUuuGGCaGCCGCGCGGGgaucagGGUcGCc -3'
miRNA:   3'- -GACGggCUG-CGGCGCGUCCa-----CCA-CGu -5'
5551 3' -62.7 NC_001806.1 + 44454 0.71 0.334101
Target:  5'- -gGCCCGGCGuCCGCGUggagcaugcggaGGGaUGGcUGCAc -3'
miRNA:   3'- gaCGGGCUGC-GGCGCG------------UCC-ACC-ACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.