Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5551 | 3' | -62.7 | NC_001806.1 | + | 35565 | 0.71 | 0.311518 |
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Target: 5'- -cGCCCGGCGCCGCGCcgaacgacGUGCGc -3' miRNA: 3'- gaCGGGCUGCGGCGCGuccac---CACGU- -5' |
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| 5551 | 3' | -62.7 | NC_001806.1 | + | 55548 | 0.72 | 0.279851 |
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Target: 5'- -gGCCCGACuUgGCGgGGGUGGUGUu -3' miRNA: 3'- gaCGGGCUGcGgCGCgUCCACCACGu -5' |
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| 5551 | 3' | -62.7 | NC_001806.1 | + | 92905 | 0.72 | 0.279851 |
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Target: 5'- -gGCCgCGugGuCCGCGCAGGgcgGG-GCGg -3' miRNA: 3'- gaCGG-GCugC-GGCGCGUCCa--CCaCGU- -5' |
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| 5551 | 3' | -62.7 | NC_001806.1 | + | 144535 | 0.73 | 0.243934 |
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Target: 5'- -gGCgCGGCcguGCCGauCGCGGGUGGUGCGa -3' miRNA: 3'- gaCGgGCUG---CGGC--GCGUCCACCACGU- -5' |
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| 5551 | 3' | -62.7 | NC_001806.1 | + | 76369 | 0.75 | 0.192658 |
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Target: 5'- cCUGCCCGAgCGaggaCGCGCuGGUGGcgUGCGu -3' miRNA: 3'- -GACGGGCU-GCg---GCGCGuCCACC--ACGU- -5' |
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| 5551 | 3' | -62.7 | NC_001806.1 | + | 22058 | 0.76 | 0.166633 |
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Target: 5'- -gGCCCGGCGCCGgGCccccgcccccGGGgcgGGUGCu -3' miRNA: 3'- gaCGGGCUGCGGCgCG----------UCCa--CCACGu -5' |
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| 5551 | 3' | -62.7 | NC_001806.1 | + | 139765 | 1.08 | 0.000821 |
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Target: 5'- aCUGCCCGACGCCGCGCAGGUGGUGCAu -3' miRNA: 3'- -GACGGGCUGCGGCGCGUCCACCACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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