miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 5' -56.8 NC_001806.1 + 91844 0.66 0.882079
Target:  5'- --cGCGGCgACCgaGCGCG-UCAUGGc- -3'
miRNA:   3'- ucaUGCCG-UGGg-CGCGCuAGUACCau -5'
5551 5' -56.8 NC_001806.1 + 91205 0.66 0.882079
Target:  5'- cGUACcuGGCGCgcgCCGCGgGAcUCGUGGg- -3'
miRNA:   3'- uCAUG--CCGUG---GGCGCgCU-AGUACCau -5'
5551 5' -56.8 NC_001806.1 + 35313 0.66 0.874944
Target:  5'- --gGCGGCgcaACCCGaCGCGGguUUAUGGa- -3'
miRNA:   3'- ucaUGCCG---UGGGC-GCGCU--AGUACCau -5'
5551 5' -56.8 NC_001806.1 + 42520 0.66 0.860026
Target:  5'- cGGUacGCGGCAagcaCGCGCaccUCGUGGUGg -3'
miRNA:   3'- -UCA--UGCCGUgg--GCGCGcu-AGUACCAU- -5'
5551 5' -56.8 NC_001806.1 + 3477 0.66 0.860026
Target:  5'- gGGcGCGGCGCCCGgCGUcGUCGUcGGc- -3'
miRNA:   3'- -UCaUGCCGUGGGC-GCGcUAGUA-CCau -5'
5551 5' -56.8 NC_001806.1 + 53876 0.66 0.852255
Target:  5'- uGUuuGGCAgCCGCGCGGggaUCAgGGUc -3'
miRNA:   3'- uCAugCCGUgGGCGCGCU---AGUaCCAu -5'
5551 5' -56.8 NC_001806.1 + 25919 0.66 0.852255
Target:  5'- cGGgcgGCGuGCGCgCGCGCGGcgggCGUGGg- -3'
miRNA:   3'- -UCa--UGC-CGUGgGCGCGCUa---GUACCau -5'
5551 5' -56.8 NC_001806.1 + 107924 0.66 0.843476
Target:  5'- uGGUGC-GCACCCaaaaccaGCGCGAccuggggcUCGUGGg- -3'
miRNA:   3'- -UCAUGcCGUGGG-------CGCGCU--------AGUACCau -5'
5551 5' -56.8 NC_001806.1 + 46902 0.66 0.842666
Target:  5'- aGGUAgGgGCgGCCCGUGCGGguugcuuaaaugCGUGGUGg -3'
miRNA:   3'- -UCAUgC-CG-UGGGCGCGCUa-----------GUACCAU- -5'
5551 5' -56.8 NC_001806.1 + 82545 0.67 0.836119
Target:  5'- --cAUGGCGCCCGCGaUGGgagCGUGcGUGc -3'
miRNA:   3'- ucaUGCCGUGGGCGC-GCUa--GUAC-CAU- -5'
5551 5' -56.8 NC_001806.1 + 77398 0.67 0.827768
Target:  5'- --gGCGGCcgcGCCCGCGCcccugcUCGUGGa- -3'
miRNA:   3'- ucaUGCCG---UGGGCGCGcu----AGUACCau -5'
5551 5' -56.8 NC_001806.1 + 23020 0.67 0.827768
Target:  5'- uGGUGCucauGCGCCUGCGCGGggaccugcgCGUGGc- -3'
miRNA:   3'- -UCAUGc---CGUGGGCGCGCUa--------GUACCau -5'
5551 5' -56.8 NC_001806.1 + 51024 0.67 0.826923
Target:  5'- --aGCGGCggguccguguuggGCCCGCGgGuccgCGUGGUGg -3'
miRNA:   3'- ucaUGCCG-------------UGGGCGCgCua--GUACCAU- -5'
5551 5' -56.8 NC_001806.1 + 96248 0.67 0.819239
Target:  5'- uGUAuCGGCcCCCG-GuCGGUCGUGGUc -3'
miRNA:   3'- uCAU-GCCGuGGGCgC-GCUAGUACCAu -5'
5551 5' -56.8 NC_001806.1 + 56654 0.67 0.810539
Target:  5'- cGgcCGGCgGCCCGUGgGAUCGuUGGg- -3'
miRNA:   3'- uCauGCCG-UGGGCGCgCUAGU-ACCau -5'
5551 5' -56.8 NC_001806.1 + 74067 0.67 0.810539
Target:  5'- aGGUGCGGacccagGCCCGUcggGCGAUCGaGGg- -3'
miRNA:   3'- -UCAUGCCg-----UGGGCG---CGCUAGUaCCau -5'
5551 5' -56.8 NC_001806.1 + 30216 0.67 0.801676
Target:  5'- --cGCGcGCcCCCGCGCGGcCGUGGc- -3'
miRNA:   3'- ucaUGC-CGuGGGCGCGCUaGUACCau -5'
5551 5' -56.8 NC_001806.1 + 136965 0.68 0.774201
Target:  5'- uAGUG-GGgGCCCGCgagcgugguGCGGUCAUGGc- -3'
miRNA:   3'- -UCAUgCCgUGGGCG---------CGCUAGUACCau -5'
5551 5' -56.8 NC_001806.1 + 115041 0.68 0.763827
Target:  5'- --cGCGGCAgCCGUguaccugcggaacGCGGUCGUGGc- -3'
miRNA:   3'- ucaUGCCGUgGGCG-------------CGCUAGUACCau -5'
5551 5' -56.8 NC_001806.1 + 5402 0.68 0.74558
Target:  5'- --gGCGGU-CCCGCGUcgGGUCGUGGa- -3'
miRNA:   3'- ucaUGCCGuGGGCGCG--CUAGUACCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.