miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 5' -56.8 NC_001806.1 + 91205 0.66 0.882079
Target:  5'- cGUACcuGGCGCgcgCCGCGgGAcUCGUGGg- -3'
miRNA:   3'- uCAUG--CCGUG---GGCGCgCU-AGUACCau -5'
5551 5' -56.8 NC_001806.1 + 115041 0.68 0.763827
Target:  5'- --cGCGGCAgCCGUguaccugcggaacGCGGUCGUGGc- -3'
miRNA:   3'- ucaUGCCGUgGGCG-------------CGCUAGUACCau -5'
5551 5' -56.8 NC_001806.1 + 136965 0.68 0.774201
Target:  5'- uAGUG-GGgGCCCGCgagcgugguGCGGUCAUGGc- -3'
miRNA:   3'- -UCAUgCCgUGGGCG---------CGCUAGUACCau -5'
5551 5' -56.8 NC_001806.1 + 30216 0.67 0.801676
Target:  5'- --cGCGcGCcCCCGCGCGGcCGUGGc- -3'
miRNA:   3'- ucaUGC-CGuGGGCGCGCUaGUACCau -5'
5551 5' -56.8 NC_001806.1 + 56654 0.67 0.810539
Target:  5'- cGgcCGGCgGCCCGUGgGAUCGuUGGg- -3'
miRNA:   3'- uCauGCCG-UGGGCGCgCUAGU-ACCau -5'
5551 5' -56.8 NC_001806.1 + 74067 0.67 0.810539
Target:  5'- aGGUGCGGacccagGCCCGUcggGCGAUCGaGGg- -3'
miRNA:   3'- -UCAUGCCg-----UGGGCG---CGCUAGUaCCau -5'
5551 5' -56.8 NC_001806.1 + 96248 0.67 0.819239
Target:  5'- uGUAuCGGCcCCCG-GuCGGUCGUGGUc -3'
miRNA:   3'- uCAU-GCCGuGGGCgC-GCUAGUACCAu -5'
5551 5' -56.8 NC_001806.1 + 51024 0.67 0.826923
Target:  5'- --aGCGGCggguccguguuggGCCCGCGgGuccgCGUGGUGg -3'
miRNA:   3'- ucaUGCCG-------------UGGGCGCgCua--GUACCAU- -5'
5551 5' -56.8 NC_001806.1 + 23020 0.67 0.827768
Target:  5'- uGGUGCucauGCGCCUGCGCGGggaccugcgCGUGGc- -3'
miRNA:   3'- -UCAUGc---CGUGGGCGCGCUa--------GUACCau -5'
5551 5' -56.8 NC_001806.1 + 5402 0.68 0.74558
Target:  5'- --gGCGGU-CCCGCGUcgGGUCGUGGa- -3'
miRNA:   3'- ucaUGCCGuGGGCGCG--CUAGUACCau -5'
5551 5' -56.8 NC_001806.1 + 105088 0.68 0.74558
Target:  5'- cGGUGCGGUAUCUGCaggGCGGcgggUCGUGGc- -3'
miRNA:   3'- -UCAUGCCGUGGGCG---CGCU----AGUACCau -5'
5551 5' -56.8 NC_001806.1 + 102274 0.69 0.725986
Target:  5'- --cGCGGCGgCgGCGCGGuuuaugucgUCGUGGUGc -3'
miRNA:   3'- ucaUGCCGUgGgCGCGCU---------AGUACCAU- -5'
5551 5' -56.8 NC_001806.1 + 1754 0.75 0.403187
Target:  5'- --gGCGGUACUCGCGCGGggaCAUGGg- -3'
miRNA:   3'- ucaUGCCGUGGGCGCGCUa--GUACCau -5'
5551 5' -56.8 NC_001806.1 + 32225 0.73 0.475361
Target:  5'- aGGcACGcGCACCCGCGCGGcCA-GGUGg -3'
miRNA:   3'- -UCaUGC-CGUGGGCGCGCUaGUaCCAU- -5'
5551 5' -56.8 NC_001806.1 + 60501 0.71 0.573577
Target:  5'- --gGCGGCACCgagaCGCGCGucUCGUGGa- -3'
miRNA:   3'- ucaUGCCGUGG----GCGCGCu-AGUACCau -5'
5551 5' -56.8 NC_001806.1 + 4010 0.71 0.593907
Target:  5'- uGUACaGCAgCCGCGUGAUCA-GGg- -3'
miRNA:   3'- uCAUGcCGUgGGCGCGCUAGUaCCau -5'
5551 5' -56.8 NC_001806.1 + 92939 0.7 0.624593
Target:  5'- gAGgcCGGgGCCCGCGCGcUgAUGGa- -3'
miRNA:   3'- -UCauGCCgUGGGCGCGCuAgUACCau -5'
5551 5' -56.8 NC_001806.1 + 16743 0.7 0.634843
Target:  5'- --cGCGGCAUCCGCGCuggGGUCGUccucuauggGGUAg -3'
miRNA:   3'- ucaUGCCGUGGGCGCG---CUAGUA---------CCAU- -5'
5551 5' -56.8 NC_001806.1 + 140687 0.7 0.634843
Target:  5'- --cGCGGCGCCCGCGUGccgCGcUGGa- -3'
miRNA:   3'- ucaUGCCGUGGGCGCGCua-GU-ACCau -5'
5551 5' -56.8 NC_001806.1 + 65470 0.69 0.703056
Target:  5'- gGGUccugGgGGCGCCCGCGCaccacgucuccgucGAugaUCAUGGUGc -3'
miRNA:   3'- -UCA----UgCCGUGGGCGCG--------------CU---AGUACCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.