miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 3' -55.5 NC_001806.1 + 70932 0.68 0.804496
Target:  5'- gGAGC-GcGCCGUGGUCGU-GGCGCCc- -3'
miRNA:   3'- -CUCGaC-CGGUACCGGUAuUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 74608 0.69 0.767197
Target:  5'- cGGGCUGucGCCAgaGGCCAcgcgcAugGCCGAg -3'
miRNA:   3'- -CUCGAC--CGGUa-CCGGUau---UugCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 74651 0.71 0.635446
Target:  5'- cGGCaGGCgCG-GGCCAUGGAUGCCGc -3'
miRNA:   3'- cUCGaCCG-GUaCCGGUAUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 74900 0.67 0.863246
Target:  5'- cGGGCUGGUCGgaccuccccgaGGCCGUucgggGGGCGCCc- -3'
miRNA:   3'- -CUCGACCGGUa----------CCGGUA-----UUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 75308 0.79 0.252236
Target:  5'- uAGC-GGCCAUGGCCGacAGCGCCGc -3'
miRNA:   3'- cUCGaCCGGUACCGGUauUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 75603 0.66 0.898919
Target:  5'- gGAGCUGGgaAaGGUCAUcgGCGCCa- -3'
miRNA:   3'- -CUCGACCggUaCCGGUAuuUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 75982 0.69 0.747765
Target:  5'- gGAGCgcggccuucggGGCCGcGGCCGacacguACGCCGAc -3'
miRNA:   3'- -CUCGa----------CCGGUaCCGGUauu---UGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 76570 0.66 0.892247
Target:  5'- -uGCUGGCCGcGcGC---GAGCGCCGGg -3'
miRNA:   3'- cuCGACCGGUaC-CGguaUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 76654 0.68 0.81344
Target:  5'- cGGCga-CCGUGGCCA-AGACGCUGGa -3'
miRNA:   3'- cUCGaccGGUACCGGUaUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 77149 0.73 0.542638
Target:  5'- gGAGCUcggggGGCgCGUGGCCcaacACGCCGAc -3'
miRNA:   3'- -CUCGA-----CCG-GUACCGGuauuUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 82097 0.7 0.707719
Target:  5'- -uGCUGGCCAUcaucGGCCGggcauccAgGCCGAg -3'
miRNA:   3'- cuCGACCGGUA----CCGGUauu----UgCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 84825 0.71 0.670753
Target:  5'- cGGCUccGGCCcgGGCCcuaucacggcaagGAGCGCCGGc -3'
miRNA:   3'- cUCGA--CCGGuaCCGGua-----------UUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 89578 0.66 0.885339
Target:  5'- cGGCcGGCCG-GGCuUAUGGAcCGCCGGc -3'
miRNA:   3'- cUCGaCCGGUaCCG-GUAUUU-GCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 90303 0.68 0.81344
Target:  5'- aGGCcaacgUGGCCGUGGUCGUGGGuucuCGCaCGAc -3'
miRNA:   3'- cUCG-----ACCGGUACCGGUAUUU----GCG-GCU- -5'
5552 3' -55.5 NC_001806.1 + 91054 0.71 0.62504
Target:  5'- -cGcCUGGCCuccgucAUGGCCGgAGACGCCGc -3'
miRNA:   3'- cuC-GACCGG------UACCGGUaUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 92350 0.67 0.863246
Target:  5'- cGGCcGGCCAgacGGCCcc---CGCCGAg -3'
miRNA:   3'- cUCGaCCGGUa--CCGGuauuuGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 92931 0.69 0.767197
Target:  5'- cGGGCcuggaGGCCggGGCCcgcgcgcugAUGGACGCCGu -3'
miRNA:   3'- -CUCGa----CCGGuaCCGG---------UAUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 97368 0.71 0.65624
Target:  5'- ----aGGCCcgGGCCAc-GGCGCCGAc -3'
miRNA:   3'- cucgaCCGGuaCCGGUauUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 98699 0.68 0.81697
Target:  5'- -cGCUGGCCGugggucuguugguccUGGCCGgccuGGCGgCGGc -3'
miRNA:   3'- cuCGACCGGU---------------ACCGGUau--UUGCgGCU- -5'
5552 3' -55.5 NC_001806.1 + 100768 0.69 0.737886
Target:  5'- cGAGCUcGGCCucggcGGCCAgu--CGCCGc -3'
miRNA:   3'- -CUCGA-CCGGua---CCGGUauuuGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.