miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 3' -55.5 NC_001806.1 + 33109 0.66 0.898919
Target:  5'- cGAGCgGGuCCGgacggGGCCcgGAcCGCCGc -3'
miRNA:   3'- -CUCGaCC-GGUa----CCGGuaUUuGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 34398 0.68 0.830809
Target:  5'- uGGGC-GGCgGUGGCCGggccGgGCCGGg -3'
miRNA:   3'- -CUCGaCCGgUACCGGUauu-UgCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 37519 0.66 0.898919
Target:  5'- -uGCgauagaGGCUcgGGCCGUGGGCGaCCa- -3'
miRNA:   3'- cuCGa-----CCGGuaCCGGUAUUUGC-GGcu -5'
5552 3' -55.5 NC_001806.1 + 40704 0.72 0.61464
Target:  5'- aAGCgcaGGCUGUGGCCGUGGGCGUa-- -3'
miRNA:   3'- cUCGa--CCGGUACCGGUAUUUGCGgcu -5'
5552 3' -55.5 NC_001806.1 + 41428 0.66 0.911542
Target:  5'- cAGC-GcGCCGUGGUCGggguGCGCCGc -3'
miRNA:   3'- cUCGaC-CGGUACCGGUauu-UGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 41864 0.69 0.757538
Target:  5'- cGAGCgcgcagguaGGCCuUGGCCGUAu-CGCCa- -3'
miRNA:   3'- -CUCGa--------CCGGuACCGGUAUuuGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 43632 0.71 0.62504
Target:  5'- gGAGCaUGGCCgagagugacGUGGUCAUGGAggauguggccauCGCCGAa -3'
miRNA:   3'- -CUCG-ACCGG---------UACCGGUAUUU------------GCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 45120 0.67 0.863246
Target:  5'- uAGCgacGGCCGUGuGCCAgu--CGCCa- -3'
miRNA:   3'- cUCGa--CCGGUAC-CGGUauuuGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 51785 0.73 0.52253
Target:  5'- aGAGCggGGCCGUggcGGCCAaguACGCCGc -3'
miRNA:   3'- -CUCGa-CCGGUA---CCGGUauuUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 59891 0.66 0.885339
Target:  5'- cGAGgaGGCCAgugaCGUGGACGCCu- -3'
miRNA:   3'- -CUCgaCCGGUaccgGUAUUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 60839 0.69 0.767197
Target:  5'- gGAGCgggGGCCGUGGaCUcuucugAAACGCCu- -3'
miRNA:   3'- -CUCGa--CCGGUACC-GGua----UUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 63129 0.67 0.863246
Target:  5'- aGGCaGGCCGUgugcaGGCCcUGcAUGCCGAu -3'
miRNA:   3'- cUCGaCCGGUA-----CCGGuAUuUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 63386 0.66 0.898919
Target:  5'- gGAGCcGGCgAUGGCCGcccccUGggUGUCGu -3'
miRNA:   3'- -CUCGaCCGgUACCGGU-----AUuuGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 65611 0.66 0.892247
Target:  5'- -cGCUGGCaguacacgugGUGGCCGUGGGCGagaggggccCCGGc -3'
miRNA:   3'- cuCGACCGg---------UACCGGUAUUUGC---------GGCU- -5'
5552 3' -55.5 NC_001806.1 + 65735 0.66 0.911542
Target:  5'- cGGCUGGgCGgcUGGCCAUuucaacAGACGCgGc -3'
miRNA:   3'- cUCGACCgGU--ACCGGUA------UUUGCGgCu -5'
5552 3' -55.5 NC_001806.1 + 66822 0.73 0.53255
Target:  5'- gGGGCcGGCCcggGUGGCCGguguGCGCCGc -3'
miRNA:   3'- -CUCGaCCGG---UACCGGUauu-UGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 67790 0.66 0.905352
Target:  5'- -uGUUGGCCGacUGGCCcgGcGCGuCCGu -3'
miRNA:   3'- cuCGACCGGU--ACCGGuaUuUGC-GGCu -5'
5552 3' -55.5 NC_001806.1 + 68274 0.69 0.776731
Target:  5'- --uCUGGCCAcGGCCAagcUGcGCGCCGc -3'
miRNA:   3'- cucGACCGGUaCCGGU---AUuUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 68660 0.67 0.8782
Target:  5'- aGAGCU-GCU-UGGCCAUGAGC-CCGc -3'
miRNA:   3'- -CUCGAcCGGuACCGGUAUUUGcGGCu -5'
5552 3' -55.5 NC_001806.1 + 70695 0.69 0.757538
Target:  5'- -uGCUGGCCGUGGUCc--GGCG-CGAa -3'
miRNA:   3'- cuCGACCGGUACCGGuauUUGCgGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.