Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5552 | 3' | -55.5 | NC_001806.1 | + | 97368 | 0.71 | 0.65624 |
Target: 5'- ----aGGCCcgGGCCAc-GGCGCCGAc -3' miRNA: 3'- cucgaCCGGuaCCGGUauUUGCGGCU- -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 26994 | 0.71 | 0.666612 |
Target: 5'- cGAGCgGGCCGaccgGGCUcgGuuccGGCGCCGGg -3' miRNA: 3'- -CUCGaCCGGUa---CCGGuaU----UUGCGGCU- -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 84825 | 0.71 | 0.670753 |
Target: 5'- cGGCUccGGCCcgGGCCcuaucacggcaagGAGCGCCGGc -3' miRNA: 3'- cUCGA--CCGGuaCCGGua-----------UUUGCGGCU- -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 82097 | 0.7 | 0.707719 |
Target: 5'- -uGCUGGCCAUcaucGGCCGggcauccAgGCCGAg -3' miRNA: 3'- cuCGACCGGUA----CCGGUauu----UgCGGCU- -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 137675 | 0.7 | 0.707719 |
Target: 5'- cGGUUGGCCccGGCCAcccacgGGGCGCUGc -3' miRNA: 3'- cUCGACCGGuaCCGGUa-----UUUGCGGCu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 30228 | 0.7 | 0.717854 |
Target: 5'- -cGC-GGCCGUGGCCccgugcgugcGAGCGCCGc -3' miRNA: 3'- cuCGaCCGGUACCGGua--------UUUGCGGCu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 108200 | 0.7 | 0.717854 |
Target: 5'- -cGCUGGgCGUGGUUAUGAuuacCGCCGc -3' miRNA: 3'- cuCGACCgGUACCGGUAUUu---GCGGCu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 100768 | 0.69 | 0.737886 |
Target: 5'- cGAGCUcGGCCucggcGGCCAgu--CGCCGc -3' miRNA: 3'- -CUCGA-CCGGua---CCGGUauuuGCGGCu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 75982 | 0.69 | 0.747765 |
Target: 5'- gGAGCgcggccuucggGGCCGcGGCCGacacguACGCCGAc -3' miRNA: 3'- -CUCGa----------CCGGUaCCGGUauu---UGCGGCU- -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 2771 | 0.69 | 0.755592 |
Target: 5'- cGGGCgGGCCugcgccgcggcGGCCcgGGGCGCCGc -3' miRNA: 3'- -CUCGaCCGGua---------CCGGuaUUUGCGGCu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 41864 | 0.69 | 0.757538 |
Target: 5'- cGAGCgcgcagguaGGCCuUGGCCGUAu-CGCCa- -3' miRNA: 3'- -CUCGa--------CCGGuACCGGUAUuuGCGGcu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 70695 | 0.69 | 0.757538 |
Target: 5'- -uGCUGGCCGUGGUCc--GGCG-CGAa -3' miRNA: 3'- cuCGACCGGUACCGGuauUUGCgGCU- -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 60839 | 0.69 | 0.767197 |
Target: 5'- gGAGCgggGGCCGUGGaCUcuucugAAACGCCu- -3' miRNA: 3'- -CUCGa--CCGGUACC-GGua----UUUGCGGcu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 74608 | 0.69 | 0.767197 |
Target: 5'- cGGGCUGucGCCAgaGGCCAcgcgcAugGCCGAg -3' miRNA: 3'- -CUCGAC--CGGUa-CCGGUau---UugCGGCU- -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 92931 | 0.69 | 0.767197 |
Target: 5'- cGGGCcuggaGGCCggGGCCcgcgcgcugAUGGACGCCGu -3' miRNA: 3'- -CUCGa----CCGGuaCCGG---------UAUUUGCGGCu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 68274 | 0.69 | 0.776731 |
Target: 5'- --uCUGGCCAcGGCCAagcUGcGCGCCGc -3' miRNA: 3'- cucGACCGGUaCCGGU---AUuUGCGGCu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 104914 | 0.69 | 0.786133 |
Target: 5'- -uGCUGGCguuCGUGGCCcucauccCGCCGAc -3' miRNA: 3'- cuCGACCG---GUACCGGuauuu--GCGGCU- -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 133234 | 0.69 | 0.786133 |
Target: 5'- cGGCgGGCCAUcgagacGGCCGUGGGaGCCGu -3' miRNA: 3'- cUCGaCCGGUA------CCGGUAUUUgCGGCu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 70932 | 0.68 | 0.804496 |
Target: 5'- gGAGC-GcGCCGUGGUCGU-GGCGCCc- -3' miRNA: 3'- -CUCGaC-CGGUACCGGUAuUUGCGGcu -5' |
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5552 | 3' | -55.5 | NC_001806.1 | + | 3360 | 0.68 | 0.804496 |
Target: 5'- cGGGCcgGGCCccGGCCAgccccgGGACgGCCGc -3' miRNA: 3'- -CUCGa-CCGGuaCCGGUa-----UUUG-CGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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