miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 5' -51.8 NC_001806.1 + 26373 0.66 0.988012
Target:  5'- uCUCCAuGGCccgccGCCGccGCCAUCGCGg -3'
miRNA:   3'- -GAGGU-UCGaa---CGGUacUGGUAGUGCg -5'
5552 5' -51.8 NC_001806.1 + 120369 0.66 0.984643
Target:  5'- cCUCCcGGCccgcuUUGCCGacuccgacGGCCAUUACGUu -3'
miRNA:   3'- -GAGGuUCG-----AACGGUa-------CUGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 121926 0.66 0.984643
Target:  5'- -cCCGGGCcgUUGCCcgGGCCuccUCAaGCg -3'
miRNA:   3'- gaGGUUCG--AACGGuaCUGGu--AGUgCG- -5'
5552 5' -51.8 NC_001806.1 + 126491 0.66 0.984643
Target:  5'- -cCCGGGCgcguccccgGCCcgGAggaggcucUCGUCACGCa -3'
miRNA:   3'- gaGGUUCGaa-------CGGuaCU--------GGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 7794 0.66 0.988012
Target:  5'- -cCCcGGCUacagggGCCAUGuuggGCCGcCACGCg -3'
miRNA:   3'- gaGGuUCGAa-----CGGUAC----UGGUaGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 70930 0.66 0.986408
Target:  5'- -aCgGAGCgcGCCGUGGUCGUgGCGCc -3'
miRNA:   3'- gaGgUUCGaaCGGUACUGGUAgUGCG- -5'
5552 5' -51.8 NC_001806.1 + 5645 0.66 0.986408
Target:  5'- aUCCGcGCcaucUGCCAUGGgCGggGCGCg -3'
miRNA:   3'- gAGGUuCGa---ACGGUACUgGUagUGCG- -5'
5552 5' -51.8 NC_001806.1 + 103626 0.66 0.988012
Target:  5'- gCUCgGGGUUUGgUcuugGUGGCCAcgggCACGCa -3'
miRNA:   3'- -GAGgUUCGAACgG----UACUGGUa---GUGCG- -5'
5552 5' -51.8 NC_001806.1 + 91529 0.66 0.988012
Target:  5'- gCUgCGacGGC--GCCGUGAUCGUCGgGCg -3'
miRNA:   3'- -GAgGU--UCGaaCGGUACUGGUAGUgCG- -5'
5552 5' -51.8 NC_001806.1 + 59491 0.66 0.984643
Target:  5'- --aCAGGCUcgggUGuCCcgGACCGUCGCa- -3'
miRNA:   3'- gagGUUCGA----AC-GGuaCUGGUAGUGcg -5'
5552 5' -51.8 NC_001806.1 + 132994 0.66 0.984643
Target:  5'- gCUCCcucaGAGCccuggGCCggGGCCGUCuuggaGCGCc -3'
miRNA:   3'- -GAGG----UUCGaa---CGGuaCUGGUAG-----UGCG- -5'
5552 5' -51.8 NC_001806.1 + 76338 0.66 0.978301
Target:  5'- -gCCGAGCUUGUCcgGGCagggGUCACc- -3'
miRNA:   3'- gaGGUUCGAACGGuaCUGg---UAGUGcg -5'
5552 5' -51.8 NC_001806.1 + 146772 0.66 0.978301
Target:  5'- aCUCCGAcGCggggGCCGUcggguacucgggGGgCAUCACGUg -3'
miRNA:   3'- -GAGGUU-CGaa--CGGUA------------CUgGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 74607 0.66 0.978301
Target:  5'- --gCGGGCUgucGCCAgaGGCCA-CGCGCa -3'
miRNA:   3'- gagGUUCGAa--CGGUa-CUGGUaGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 141560 0.66 0.980599
Target:  5'- uUCCAGGCaa-CCGUGGCCGcUCAucCGUg -3'
miRNA:   3'- gAGGUUCGaacGGUACUGGU-AGU--GCG- -5'
5552 5' -51.8 NC_001806.1 + 66815 0.66 0.982507
Target:  5'- -gCCGAGCgggGCCGgcccgggUGGCCGgugUGCGCc -3'
miRNA:   3'- gaGGUUCGaa-CGGU-------ACUGGUa--GUGCG- -5'
5552 5' -51.8 NC_001806.1 + 106986 0.66 0.98271
Target:  5'- uCUCCGAccuGCUagGCUuuuUGGCCcacUCGCGCg -3'
miRNA:   3'- -GAGGUU---CGAa-CGGu--ACUGGu--AGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 37259 0.66 0.984643
Target:  5'- gUCCAGGCc-GCaCA-GGCC-UCGCGCc -3'
miRNA:   3'- gAGGUUCGaaCG-GUaCUGGuAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 90609 0.66 0.984643
Target:  5'- gCUUCAAGgagGCCGUGugCAUCAacaacaccuuucUGCa -3'
miRNA:   3'- -GAGGUUCgaaCGGUACugGUAGU------------GCG- -5'
5552 5' -51.8 NC_001806.1 + 9531 0.67 0.970203
Target:  5'- uCUCCGGGgggGCCAgccacggGACCugGUCGCGUu -3'
miRNA:   3'- -GAGGUUCgaaCGGUa------CUGG--UAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.