miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 5' -51.8 NC_001806.1 + 2400 0.67 0.973111
Target:  5'- aUCCAGGCc-GCCAUGcggcgcagcggGCCcgaggCGCGCa -3'
miRNA:   3'- gAGGUUCGaaCGGUAC-----------UGGua---GUGCG- -5'
5552 5' -51.8 NC_001806.1 + 2937 0.68 0.947958
Target:  5'- cCUCCGGGCggccggGCCGggccggGACUcUUGCGCu -3'
miRNA:   3'- -GAGGUUCGaa----CGGUa-----CUGGuAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 5645 0.66 0.986408
Target:  5'- aUCCGcGCcaucUGCCAUGGgCGggGCGCg -3'
miRNA:   3'- gAGGUuCGa---ACGGUACUgGUagUGCG- -5'
5552 5' -51.8 NC_001806.1 + 7794 0.66 0.988012
Target:  5'- -cCCcGGCUacagggGCCAUGuuggGCCGcCACGCg -3'
miRNA:   3'- gaGGuUCGAa-----CGGUAC----UGGUaGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 9531 0.67 0.970203
Target:  5'- uCUCCGGGgggGCCAgccacggGACCugGUCGCGUu -3'
miRNA:   3'- -GAGGUUCgaaCGGUa------CUGG--UAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 11469 0.76 0.606939
Target:  5'- gCUCCgAGGCggGCCAUGGCCGcuucguUCACcGCg -3'
miRNA:   3'- -GAGG-UUCGaaCGGUACUGGU------AGUG-CG- -5'
5552 5' -51.8 NC_001806.1 + 22787 0.7 0.910717
Target:  5'- -cCCAGGCcgGCCgcGUGGCCGUCGagUGCc -3'
miRNA:   3'- gaGGUUCGaaCGG--UACUGGUAGU--GCG- -5'
5552 5' -51.8 NC_001806.1 + 23617 0.7 0.883866
Target:  5'- gCUCCccGCgcGCCGUGGCCGagcUCACGg -3'
miRNA:   3'- -GAGGuuCGaaCGGUACUGGU---AGUGCg -5'
5552 5' -51.8 NC_001806.1 + 26373 0.66 0.988012
Target:  5'- uCUCCAuGGCccgccGCCGccGCCAUCGCGg -3'
miRNA:   3'- -GAGGU-UCGaa---CGGUacUGGUAGUGCg -5'
5552 5' -51.8 NC_001806.1 + 36848 0.67 0.968354
Target:  5'- -gCCGGGCccacccccgccaucUGCCGUGACC--CACGCc -3'
miRNA:   3'- gaGGUUCGa-------------ACGGUACUGGuaGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 37259 0.66 0.984643
Target:  5'- gUCCAGGCc-GCaCA-GGCC-UCGCGCc -3'
miRNA:   3'- gAGGUUCGaaCG-GUaCUGGuAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 41365 0.7 0.890949
Target:  5'- aUCCAGGCc-GCCAggGGgCAUCACGg -3'
miRNA:   3'- gAGGUUCGaaCGGUa-CUgGUAGUGCg -5'
5552 5' -51.8 NC_001806.1 + 59491 0.66 0.984643
Target:  5'- --aCAGGCUcgggUGuCCcgGACCGUCGCa- -3'
miRNA:   3'- gagGUUCGA----AC-GGuaCUGGUAGUGcg -5'
5552 5' -51.8 NC_001806.1 + 63124 0.72 0.819112
Target:  5'- gCUUCAGGCagGCCGUGugCAggcccugCAUGCc -3'
miRNA:   3'- -GAGGUUCGaaCGGUACugGUa------GUGCG- -5'
5552 5' -51.8 NC_001806.1 + 65571 0.68 0.947958
Target:  5'- -cCCGGGCgucuUGUCGgaaaGcACCAUCACGCc -3'
miRNA:   3'- gaGGUUCGa---ACGGUa---C-UGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 66815 0.66 0.982507
Target:  5'- -gCCGAGCgggGCCGgcccgggUGGCCGgugUGCGCc -3'
miRNA:   3'- gaGGUUCGaa-CGGU-------ACUGGUa--GUGCG- -5'
5552 5' -51.8 NC_001806.1 + 70930 0.66 0.986408
Target:  5'- -aCgGAGCgcGCCGUGGUCGUgGCGCc -3'
miRNA:   3'- gaGgUUCGaaCGGUACUGGUAgUGCG- -5'
5552 5' -51.8 NC_001806.1 + 71135 0.68 0.956325
Target:  5'- aCUCCGuggaucuGuCUcGCCAggggcUGGCCGUUACGCu -3'
miRNA:   3'- -GAGGUu------C-GAaCGGU-----ACUGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 72462 0.75 0.649302
Target:  5'- gUUC-AGCgaacgGCgCGUGGCCAUCACGCa -3'
miRNA:   3'- gAGGuUCGaa---CG-GUACUGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 74607 0.66 0.978301
Target:  5'- --gCGGGCUgucGCCAgaGGCCA-CGCGCa -3'
miRNA:   3'- gagGUUCGAa--CGGUa-CUGGUaGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.