miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 5' -51.8 NC_001806.1 + 146772 0.66 0.978301
Target:  5'- aCUCCGAcGCggggGCCGUcggguacucgggGGgCAUCACGUg -3'
miRNA:   3'- -GAGGUU-CGaa--CGGUA------------CUgGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 141560 0.66 0.980599
Target:  5'- uUCCAGGCaa-CCGUGGCCGcUCAucCGUg -3'
miRNA:   3'- gAGGUUCGaacGGUACUGGU-AGU--GCG- -5'
5552 5' -51.8 NC_001806.1 + 139399 1.13 0.003589
Target:  5'- gCUCCAAGCUUGCCAUGACCAUCACGCg -3'
miRNA:   3'- -GAGGUUCGAACGGUACUGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 139354 0.76 0.585845
Target:  5'- aCUCUacgGAGCUgGCCAUGGCCAUaaACGCc -3'
miRNA:   3'- -GAGG---UUCGAaCGGUACUGGUAg-UGCG- -5'
5552 5' -51.8 NC_001806.1 + 132994 0.66 0.984643
Target:  5'- gCUCCcucaGAGCccuggGCCggGGCCGUCuuggaGCGCc -3'
miRNA:   3'- -GAGG----UUCGaa---CGGuaCUGGUAG-----UGCG- -5'
5552 5' -51.8 NC_001806.1 + 126491 0.66 0.984643
Target:  5'- -cCCGGGCgcguccccgGCCcgGAggaggcucUCGUCACGCa -3'
miRNA:   3'- gaGGUUCGaa-------CGGuaCU--------GGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 122799 0.67 0.963726
Target:  5'- uUCCA-GCUUgGCCGUGuggucGCCcccgaaAUCACGCc -3'
miRNA:   3'- gAGGUuCGAA-CGGUAC-----UGG------UAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 121926 0.66 0.984643
Target:  5'- -cCCGGGCcgUUGCCcgGGCCuccUCAaGCg -3'
miRNA:   3'- gaGGUUCG--AACGGuaCUGGu--AGUgCG- -5'
5552 5' -51.8 NC_001806.1 + 120369 0.66 0.984643
Target:  5'- cCUCCcGGCccgcuUUGCCGacuccgacGGCCAUUACGUu -3'
miRNA:   3'- -GAGGuUCG-----AACGGUa-------CUGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 120102 0.74 0.71221
Target:  5'- cCUCCGGGCccuggGCCA-GGCCAUCcgggccGCGCu -3'
miRNA:   3'- -GAGGUUCGaa---CGGUaCUGGUAG------UGCG- -5'
5552 5' -51.8 NC_001806.1 + 106986 0.66 0.98271
Target:  5'- uCUCCGAccuGCUagGCUuuuUGGCCcacUCGCGCg -3'
miRNA:   3'- -GAGGUU---CGAa-CGGu--ACUGGu--AGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 103626 0.66 0.988012
Target:  5'- gCUCgGGGUUUGgUcuugGUGGCCAcgggCACGCa -3'
miRNA:   3'- -GAGgUUCGAACgG----UACUGGUa---GUGCG- -5'
5552 5' -51.8 NC_001806.1 + 93869 0.69 0.938592
Target:  5'- aCUCCcGGCUUGCCGgucggcgGGCCcgCGgGa -3'
miRNA:   3'- -GAGGuUCGAACGGUa------CUGGuaGUgCg -5'
5552 5' -51.8 NC_001806.1 + 91806 0.78 0.503454
Target:  5'- aUCCGAGaccGCCG-GACCAUCAUGCa -3'
miRNA:   3'- gAGGUUCgaaCGGUaCUGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 91529 0.66 0.988012
Target:  5'- gCUgCGacGGC--GCCGUGAUCGUCGgGCg -3'
miRNA:   3'- -GAgGU--UCGaaCGGUACUGGUAGUgCG- -5'
5552 5' -51.8 NC_001806.1 + 90609 0.66 0.984643
Target:  5'- gCUUCAAGgagGCCGUGugCAUCAacaacaccuuucUGCa -3'
miRNA:   3'- -GAGGUUCgaaCGGUACugGUAGU------------GCG- -5'
5552 5' -51.8 NC_001806.1 + 89468 0.74 0.722497
Target:  5'- -cCCAGGCUcGCCcgGGCCggCAUGUg -3'
miRNA:   3'- gaGGUUCGAaCGGuaCUGGuaGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 77126 0.67 0.975807
Target:  5'- -gCCGAGCggGCCggGGCCGUgGaggaGCu -3'
miRNA:   3'- gaGGUUCGaaCGGuaCUGGUAgUg---CG- -5'
5552 5' -51.8 NC_001806.1 + 76650 0.7 0.890949
Target:  5'- gUCCcGGCga-CCGUGGCCAagACGCu -3'
miRNA:   3'- gAGGuUCGaacGGUACUGGUagUGCG- -5'
5552 5' -51.8 NC_001806.1 + 76338 0.66 0.978301
Target:  5'- -gCCGAGCUUGUCcgGGCagggGUCACc- -3'
miRNA:   3'- gaGGUUCGAACGGuaCUGg---UAGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.