miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 3' -56.4 NC_001806.1 + 86665 0.66 0.878491
Target:  5'- aGC-CcgGCgGCcGUGAGGccgcgGCACAGCa -3'
miRNA:   3'- cCGuGuaCG-CGaCGCUCCa----CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 88680 0.71 0.63933
Target:  5'- cGGC-CAUGCGCUcgcagagaucucGUG-GG-GCGCGGCa -3'
miRNA:   3'- -CCGuGUACGCGA------------CGCuCCaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 89511 0.66 0.892346
Target:  5'- uGGCGgAUccGgGCgGCGAGcugcUGCGCGGCg -3'
miRNA:   3'- -CCGUgUA--CgCGaCGCUCc---ACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 90666 0.67 0.848172
Target:  5'- aGGUAaccauagGCGggGCgGAGGUGCACcGCa -3'
miRNA:   3'- -CCGUgua----CGCgaCG-CUCCACGUGuCG- -5'
5553 3' -56.4 NC_001806.1 + 91003 0.69 0.710601
Target:  5'- cGGgGCggGCGCgacgGCGGcGGcaaggGCGCGGCg -3'
miRNA:   3'- -CCgUGuaCGCGa---CGCU-CCa----CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 91742 0.67 0.856064
Target:  5'- uGUACA-GCGaCUGCGAcGUGCugGGa -3'
miRNA:   3'- cCGUGUaCGC-GACGCUcCACGugUCg -5'
5553 3' -56.4 NC_001806.1 + 91977 0.69 0.740318
Target:  5'- aGGCAgGU-CGUggaccGCGAGGUGgaGCAGCu -3'
miRNA:   3'- -CCGUgUAcGCGa----CGCUCCACg-UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 94775 0.66 0.874161
Target:  5'- gGGCGCucuccguguuggaccAUGCGCUggcccggacGCGGGGgGCgacggGCAGCc -3'
miRNA:   3'- -CCGUG---------------UACGCGA---------CGCUCCaCG-----UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 95290 0.76 0.348909
Target:  5'- cGCGCAUGgGg-GCGGGGgGCGCGGCg -3'
miRNA:   3'- cCGUGUACgCgaCGCUCCaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 95553 0.68 0.805897
Target:  5'- gGGCGC-UGCGUccGCGAGcaGCGCGGg -3'
miRNA:   3'- -CCGUGuACGCGa-CGCUCcaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 99722 0.67 0.840083
Target:  5'- cGUAgGggGCGCUGUGuGGUGgGgGGCg -3'
miRNA:   3'- cCGUgUa-CGCGACGCuCCACgUgUCG- -5'
5553 3' -56.4 NC_001806.1 + 100903 0.67 0.82334
Target:  5'- cGCgACGUGCGCgaacagcgUGCGAucggGGUGCGCcucgccccccaGGCg -3'
miRNA:   3'- cCG-UGUACGCG--------ACGCU----CCACGUG-----------UCG- -5'
5553 3' -56.4 NC_001806.1 + 106531 0.66 0.885532
Target:  5'- aGCugGUGCucgGgUGCGAugccgcgcuGGUGCGCGcGCg -3'
miRNA:   3'- cCGugUACG---CgACGCU---------CCACGUGU-CG- -5'
5553 3' -56.4 NC_001806.1 + 109691 0.75 0.397925
Target:  5'- gGGCugGUuCGCaGCGAGGUGCAguacuCGGCc -3'
miRNA:   3'- -CCGugUAcGCGaCGCUCCACGU-----GUCG- -5'
5553 3' -56.4 NC_001806.1 + 109934 0.68 0.778566
Target:  5'- uGGCAaucuccccGgGCUGCGAGGcaCACGGCc -3'
miRNA:   3'- -CCGUgua-----CgCGACGCUCCacGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 112703 0.72 0.567739
Target:  5'- cGCGCGUGCGC-GCGGaucuGGUGUccauCGGCg -3'
miRNA:   3'- cCGUGUACGCGaCGCU----CCACGu---GUCG- -5'
5553 3' -56.4 NC_001806.1 + 116159 0.68 0.778566
Target:  5'- cGGCGCugcaGCGCUGCGAaGG-GCGggUGGUa -3'
miRNA:   3'- -CCGUGua--CGCGACGCU-CCaCGU--GUCG- -5'
5553 3' -56.4 NC_001806.1 + 117750 0.68 0.796934
Target:  5'- uGCACGUGCGUgGCGuGGcG-ACGGCc -3'
miRNA:   3'- cCGUGUACGCGaCGCuCCaCgUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 118833 0.71 0.618788
Target:  5'- gGGCuCAUGCcaccgGCGAcuguaccccguGGUGCACGGCg -3'
miRNA:   3'- -CCGuGUACGcga--CGCU-----------CCACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 127898 0.67 0.814703
Target:  5'- aGGCGCggGUGCaGCGGa--GCACGGCc -3'
miRNA:   3'- -CCGUGuaCGCGaCGCUccaCGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.