miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 3' -56.4 NC_001806.1 + 24660 0.67 0.848172
Target:  5'- uGUACGUGgCGCUGgGGcgcgaggcGGUGCGCgccGGCc -3'
miRNA:   3'- cCGUGUAC-GCGACgCU--------CCACGUG---UCG- -5'
5553 3' -56.4 NC_001806.1 + 25703 0.68 0.805897
Target:  5'- gGGUACGUcuggaGgaGCggGAGGUGCGCGGUg -3'
miRNA:   3'- -CCGUGUAcg---CgaCG--CUCCACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 25920 0.67 0.814703
Target:  5'- gGGCgGCGUGCGCgcgcgcggcggGCGuGGggGCGgGGCc -3'
miRNA:   3'- -CCG-UGUACGCGa----------CGCuCCa-CGUgUCG- -5'
5553 3' -56.4 NC_001806.1 + 26805 0.68 0.805897
Target:  5'- uGGCGCGccUGCGcCUGCGAc--GCGCGGg -3'
miRNA:   3'- -CCGUGU--ACGC-GACGCUccaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 30389 0.71 0.588069
Target:  5'- gGGCGCGUGCGa--CGGuGGcGCGCGGCu -3'
miRNA:   3'- -CCGUGUACGCgacGCU-CCaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 35560 0.72 0.557639
Target:  5'- cGGCGCGcccgGCGCcGCGccgaacgacGUGCGCAGCg -3'
miRNA:   3'- -CCGUGUa---CGCGaCGCuc-------CACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 37304 0.78 0.264296
Target:  5'- gGGcCGCAgGCGCgugGCGAGGUuauccaGCACAGCc -3'
miRNA:   3'- -CC-GUGUaCGCGa--CGCUCCA------CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 37795 0.66 0.885532
Target:  5'- gGGCGCGggggucCGCggGCGGGGggGCAaucgcCAGCg -3'
miRNA:   3'- -CCGUGUac----GCGa-CGCUCCa-CGU-----GUCG- -5'
5553 3' -56.4 NC_001806.1 + 40562 0.7 0.700548
Target:  5'- cGGgGCGUgaaaauggaaGCGCcGCGGGucggcGUGCGCGGCg -3'
miRNA:   3'- -CCgUGUA----------CGCGaCGCUC-----CACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 50585 0.66 0.892346
Target:  5'- uGCugG-GCGCUGCGGuGUacGCGCuGCa -3'
miRNA:   3'- cCGugUaCGCGACGCUcCA--CGUGuCG- -5'
5553 3' -56.4 NC_001806.1 + 59182 0.74 0.450225
Target:  5'- gGGCGUAUGcCGCUGCGAGGgugggGUuuugaugGCAGCc -3'
miRNA:   3'- -CCGUGUAC-GCGACGCUCCa----CG-------UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 59361 0.7 0.65985
Target:  5'- cGCACcgGCGCaUGCaGGGUGCu--GCa -3'
miRNA:   3'- cCGUGuaCGCG-ACGcUCCACGuguCG- -5'
5553 3' -56.4 NC_001806.1 + 66232 0.66 0.87123
Target:  5'- gGGCGgA-GCGUUGUGuGG-GCGgGGCg -3'
miRNA:   3'- -CCGUgUaCGCGACGCuCCaCGUgUCG- -5'
5553 3' -56.4 NC_001806.1 + 67245 0.68 0.769179
Target:  5'- aGGCAgGU-CG--GCGGGGUGCcGCAGCg -3'
miRNA:   3'- -CCGUgUAcGCgaCGCUCCACG-UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 69589 0.7 0.67008
Target:  5'- cGCACggGCGgcuCUGCGAGGcGguCGGCc -3'
miRNA:   3'- cCGUGuaCGC---GACGCUCCaCguGUCG- -5'
5553 3' -56.4 NC_001806.1 + 71003 0.67 0.848172
Target:  5'- uGGCGCAUGCGCc-CGAGGacgcccccccGCAaAGCc -3'
miRNA:   3'- -CCGUGUACGCGacGCUCCa---------CGUgUCG- -5'
5553 3' -56.4 NC_001806.1 + 74628 0.67 0.831803
Target:  5'- cGCGCAUggccgaggaaGCGCUGCGGcagGCGCGGg -3'
miRNA:   3'- cCGUGUA----------CGCGACGCUccaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 75790 0.67 0.848172
Target:  5'- cGCcuGCAgGCGCUgGCGGGcacGCACGGCu -3'
miRNA:   3'- cCG--UGUaCGCGA-CGCUCca-CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 76546 0.69 0.750046
Target:  5'- gGGuCACGgcgGgGCUGCggGAGGUGCugGccGCg -3'
miRNA:   3'- -CC-GUGUa--CgCGACG--CUCCACGugU--CG- -5'
5553 3' -56.4 NC_001806.1 + 83635 0.67 0.84657
Target:  5'- cGGCACuuuuuucuccacUGCuGCUuccguaccgacgGCGGGGUGCccggGCGGCa -3'
miRNA:   3'- -CCGUGu-----------ACG-CGA------------CGCUCCACG----UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.