Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5553 | 3' | -56.4 | NC_001806.1 | + | 59361 | 0.7 | 0.65985 |
Target: 5'- cGCACcgGCGCaUGCaGGGUGCu--GCa -3' miRNA: 3'- cCGUGuaCGCG-ACGcUCCACGuguCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 69589 | 0.7 | 0.67008 |
Target: 5'- cGCACggGCGgcuCUGCGAGGcGguCGGCc -3' miRNA: 3'- cCGUGuaCGC---GACGCUCCaCguGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 9195 | 0.7 | 0.700548 |
Target: 5'- gGGuCGCggGUGUgGCGAGG-GCGCGGUc -3' miRNA: 3'- -CC-GUGuaCGCGaCGCUCCaCGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 40562 | 0.7 | 0.700548 |
Target: 5'- cGGgGCGUgaaaauggaaGCGCcGCGGGucggcGUGCGCGGCg -3' miRNA: 3'- -CCgUGUA----------CGCGaCGCUC-----CACGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 7760 | 0.69 | 0.710601 |
Target: 5'- cGCAUGUGCGCUGCaaacGUGCGCGa- -3' miRNA: 3'- cCGUGUACGCGACGcuc-CACGUGUcg -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 91003 | 0.69 | 0.710601 |
Target: 5'- cGGgGCggGCGCgacgGCGGcGGcaaggGCGCGGCg -3' miRNA: 3'- -CCgUGuaCGCGa---CGCU-CCa----CGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 3992 | 0.69 | 0.720586 |
Target: 5'- aGGCcUccGCGUc-CGGGGUGUACAGCa -3' miRNA: 3'- -CCGuGuaCGCGacGCUCCACGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 91977 | 0.69 | 0.740318 |
Target: 5'- aGGCAgGU-CGUggaccGCGAGGUGgaGCAGCu -3' miRNA: 3'- -CCGUgUAcGCGa----CGCUCCACg-UGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 76546 | 0.69 | 0.750046 |
Target: 5'- gGGuCACGgcgGgGCUGCggGAGGUGCugGccGCg -3' miRNA: 3'- -CC-GUGUa--CgCGACG--CUCCACGugU--CG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 67245 | 0.68 | 0.769179 |
Target: 5'- aGGCAgGU-CG--GCGGGGUGCcGCAGCg -3' miRNA: 3'- -CCGUgUAcGCgaCGCUCCACG-UGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 116159 | 0.68 | 0.778566 |
Target: 5'- cGGCGCugcaGCGCUGCGAaGG-GCGggUGGUa -3' miRNA: 3'- -CCGUGua--CGCGACGCU-CCaCGU--GUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 109934 | 0.68 | 0.778566 |
Target: 5'- uGGCAaucuccccGgGCUGCGAGGcaCACGGCc -3' miRNA: 3'- -CCGUgua-----CgCGACGCUCCacGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 117750 | 0.68 | 0.796934 |
Target: 5'- uGCACGUGCGUgGCGuGGcG-ACGGCc -3' miRNA: 3'- cCGUGUACGCGaCGCuCCaCgUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 25703 | 0.68 | 0.805897 |
Target: 5'- gGGUACGUcuggaGgaGCggGAGGUGCGCGGUg -3' miRNA: 3'- -CCGUGUAcg---CgaCG--CUCCACGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 26805 | 0.68 | 0.805897 |
Target: 5'- uGGCGCGccUGCGcCUGCGAc--GCGCGGg -3' miRNA: 3'- -CCGUGU--ACGC-GACGCUccaCGUGUCg -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 95553 | 0.68 | 0.805897 |
Target: 5'- gGGCGC-UGCGUccGCGAGcaGCGCGGg -3' miRNA: 3'- -CCGUGuACGCGa-CGCUCcaCGUGUCg -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 127898 | 0.67 | 0.814703 |
Target: 5'- aGGCGCggGUGCaGCGGa--GCACGGCc -3' miRNA: 3'- -CCGUGuaCGCGaCGCUccaCGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 25920 | 0.67 | 0.814703 |
Target: 5'- gGGCgGCGUGCGCgcgcgcggcggGCGuGGggGCGgGGCc -3' miRNA: 3'- -CCG-UGUACGCGa----------CGCuCCa-CGUgUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 24436 | 0.67 | 0.814703 |
Target: 5'- cGGCaACGUGCGCUacCGc-GUGCGCAcGCg -3' miRNA: 3'- -CCG-UGUACGCGAc-GCucCACGUGU-CG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 100903 | 0.67 | 0.82334 |
Target: 5'- cGCgACGUGCGCgaacagcgUGCGAucggGGUGCGCcucgccccccaGGCg -3' miRNA: 3'- cCG-UGUACGCG--------ACGCU----CCACGUG-----------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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