miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 5' -57.4 NC_001806.1 + 146857 0.68 0.745178
Target:  5'- gGGgacCGcGGCCCGCAGCcGgGUCGCc -3'
miRNA:   3'- aCCa--GCaCCGGGCGUUGcUgCAGUGa -5'
5553 5' -57.4 NC_001806.1 + 4425 0.68 0.745178
Target:  5'- gGGggGUGGCCCGgGcggggGCGGCGUC-Cg -3'
miRNA:   3'- aCCagCACCGGGCgU-----UGCUGCAGuGa -5'
5553 5' -57.4 NC_001806.1 + 135800 0.69 0.72588
Target:  5'- cUGGUCcUGGCCCGCAgacccGCGGCuGUuucCGCc -3'
miRNA:   3'- -ACCAGcACCGGGCGU-----UGCUG-CA---GUGa -5'
5553 5' -57.4 NC_001806.1 + 59352 0.69 0.72588
Target:  5'- aGGU--UGGCCCGCAcCGGCG-CAUg -3'
miRNA:   3'- aCCAgcACCGGGCGUuGCUGCaGUGa -5'
5553 5' -57.4 NC_001806.1 + 4745 0.69 0.716109
Target:  5'- gGGcCGgGGCCCGgucgcCGGCGGCGUCGgCUg -3'
miRNA:   3'- aCCaGCaCCGGGC-----GUUGCUGCAGU-GA- -5'
5553 5' -57.4 NC_001806.1 + 93882 0.7 0.676415
Target:  5'- cGGUCGgcgGGCCCGCGG-GAgGcCGCc -3'
miRNA:   3'- aCCAGCa--CCGGGCGUUgCUgCaGUGa -5'
5553 5' -57.4 NC_001806.1 + 57911 0.7 0.666382
Target:  5'- uUGGUCGUGGgagugaCCCGCGuggucgACGACGgCAUc -3'
miRNA:   3'- -ACCAGCACC------GGGCGU------UGCUGCaGUGa -5'
5553 5' -57.4 NC_001806.1 + 21927 0.7 0.666382
Target:  5'- cGG-CgGUGGCCgGCcGCGACGcCACg -3'
miRNA:   3'- aCCaG-CACCGGgCGuUGCUGCaGUGa -5'
5553 5' -57.4 NC_001806.1 + 131872 0.7 0.666382
Target:  5'- -cGUCGUGGCggccgcccgcgCCGCGACGACGcCGg- -3'
miRNA:   3'- acCAGCACCG-----------GGCGUUGCUGCaGUga -5'
5553 5' -57.4 NC_001806.1 + 90317 0.7 0.646243
Target:  5'- gUGGUCGUGGguuCUCGC-ACGACGggGCUc -3'
miRNA:   3'- -ACCAGCACC---GGGCGuUGCUGCagUGA- -5'
5553 5' -57.4 NC_001806.1 + 91981 0.7 0.62606
Target:  5'- aGGUCGUGGaCCGCGAgGugGagcaGCUg -3'
miRNA:   3'- aCCAGCACCgGGCGUUgCugCag--UGA- -5'
5553 5' -57.4 NC_001806.1 + 3070 0.71 0.585806
Target:  5'- cUGGUUGUcaaacagcaGGUCCGCGGCGGCGgcggcCGCg -3'
miRNA:   3'- -ACCAGCA---------CCGGGCGUUGCUGCa----GUGa -5'
5553 5' -57.4 NC_001806.1 + 90845 0.72 0.555933
Target:  5'- cGGUCGUGGgaCCCGCcgcCGugG-CACUg -3'
miRNA:   3'- aCCAGCACC--GGGCGuu-GCugCaGUGA- -5'
5553 5' -57.4 NC_001806.1 + 67027 0.73 0.460439
Target:  5'- uUGGcCGUgacgugGGCCCGUAccgcaucgGCGGCGUCGCg -3'
miRNA:   3'- -ACCaGCA------CCGGGCGU--------UGCUGCAGUGa -5'
5553 5' -57.4 NC_001806.1 + 102251 0.77 0.286378
Target:  5'- aGGUUGUGGCCCcggcugaggaacGCGGCGGCGgCGCg -3'
miRNA:   3'- aCCAGCACCGGG------------CGUUGCUGCaGUGa -5'
5553 5' -57.4 NC_001806.1 + 138445 1.07 0.003176
Target:  5'- cUGGUCGUGGCCCGCAACGACGUCACUu -3'
miRNA:   3'- -ACCAGCACCGGGCGUUGCUGCAGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.