miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 5' -56.8 NC_001806.1 + 19344 0.66 0.872351
Target:  5'- --aCCGCCCcccaaGCC---UCCGGGGGGc -3'
miRNA:   3'- aaaGGCGGGaa---CGGcuuAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 51111 0.66 0.872351
Target:  5'- --gCCGCCCUgcgggcGCaCGug-UCGGGGAGg -3'
miRNA:   3'- aaaGGCGGGAa-----CG-GCuuaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 64963 0.66 0.872351
Target:  5'- ---gCGCCCggGCCGGggGUCCcGGGGc -3'
miRNA:   3'- aaagGCGGGaaCGGCU--UAGGuCCCUc -5'
5555 5' -56.8 NC_001806.1 + 2710 0.66 0.864879
Target:  5'- --gCCGCCa--GCCGc--CCAGGGGGu -3'
miRNA:   3'- aaaGGCGGgaaCGGCuuaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 23262 0.66 0.841212
Target:  5'- --gCCGCCUccGCCGcg-CCGcGGGAGg -3'
miRNA:   3'- aaaGGCGGGaaCGGCuuaGGU-CCCUC- -5'
5555 5' -56.8 NC_001806.1 + 22115 0.66 0.841212
Target:  5'- --gCCGCCCggGCC---UCUGGGGGGc -3'
miRNA:   3'- aaaGGCGGGaaCGGcuuAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 103197 0.66 0.841212
Target:  5'- -cUCCGCC---GCCGucUCCcgGGGGAGg -3'
miRNA:   3'- aaAGGCGGgaaCGGCuuAGG--UCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 87879 0.67 0.82446
Target:  5'- --cCCGgCCguucaugcgGCCGuacccGUCCAGGGGGa -3'
miRNA:   3'- aaaGGCgGGaa-------CGGCu----UAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 132524 0.67 0.806107
Target:  5'- --cCCGUCUUUGCCuuucuggggcccGAguuugagGUCCGGGGGGg -3'
miRNA:   3'- aaaGGCGGGAACGG------------CU-------UAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 137067 0.67 0.798021
Target:  5'- --aCCGaCCa--GCCGu-UCCAGGGAGg -3'
miRNA:   3'- aaaGGC-GGgaaCGGCuuAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 5577 0.67 0.798021
Target:  5'- --cCCGCCCcgacGCCGGcacgCCGGGGGc -3'
miRNA:   3'- aaaGGCGGGaa--CGGCUua--GGUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 57794 0.68 0.770214
Target:  5'- --gUCGUCCU--CCGuGUCCAGGGGGa -3'
miRNA:   3'- aaaGGCGGGAacGGCuUAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 73985 0.68 0.770214
Target:  5'- --cCCGCCCcgGCCGGGgcggCCccgcAGGGGGc -3'
miRNA:   3'- aaaGGCGGGaaCGGCUUa---GG----UCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 71803 0.68 0.760683
Target:  5'- gUUCgCGCCCgacCUGGAgCCGGGGGGg -3'
miRNA:   3'- aAAG-GCGGGaacGGCUUaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 45836 0.68 0.751037
Target:  5'- --gCCGCuCCgugaaGUCGggUCCGcGGGAGg -3'
miRNA:   3'- aaaGGCG-GGaa---CGGCuuAGGU-CCCUC- -5'
5555 5' -56.8 NC_001806.1 + 132907 0.69 0.711484
Target:  5'- --gCgGCCCUgGCCGAccUCGGGGGGa -3'
miRNA:   3'- aaaGgCGGGAaCGGCUuaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 147676 0.69 0.701401
Target:  5'- -cUCCGCCCcggggGCCGGggCgCGGGGGc -3'
miRNA:   3'- aaAGGCGGGaa---CGGCUuaG-GUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 70329 0.69 0.681067
Target:  5'- ---aCGCCCUgGCCGc--CCGGGGGGu -3'
miRNA:   3'- aaagGCGGGAaCGGCuuaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 26635 0.69 0.681067
Target:  5'- --cCCGCCCgaGCCGGcgCCAGaGGc- -3'
miRNA:   3'- aaaGGCGGGaaCGGCUuaGGUC-CCuc -5'
5555 5' -56.8 NC_001806.1 + 137577 0.7 0.639979
Target:  5'- ---gCGCCCUgGCCGccUCCGGGGGc -3'
miRNA:   3'- aaagGCGGGAaCGGCuuAGGUCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.