Results 61 - 80 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 94716 | 0.71 | 0.624315 |
Target: 5'- cAACGAGCUGCGG-CGGUACCUgccccacgccgccGGGCu -3' miRNA: 3'- cUUGCUUGGCGUUgGCCGUGGG-------------UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 54611 | 0.71 | 0.625332 |
Target: 5'- gGAcCGGACCGUAGCCaGC-CCgGGGUg -3' miRNA: 3'- -CUuGCUUGGCGUUGGcCGuGGgUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 41344 | 0.71 | 0.625332 |
Target: 5'- -cACGuacauCUGCcccCCGGCAUCCAGGCc -3' miRNA: 3'- cuUGCuu---GGCGuu-GGCCGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 28000 | 0.71 | 0.625332 |
Target: 5'- gGAGCGAGaCGCAGCagccaGGCagACUCGGGCc -3' miRNA: 3'- -CUUGCUUgGCGUUGg----CCG--UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 1651 | 0.71 | 0.625332 |
Target: 5'- -uGCGAGugggccuccuccUCGCAGaaguCCGGCGCgCCGGGCg -3' miRNA: 3'- cuUGCUU------------GGCGUU----GGCCGUG-GGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 92958 | 0.71 | 0.635503 |
Target: 5'- uGAugGAcGCCGUGGaCGcGCAUCCGGGCg -3' miRNA: 3'- -CUugCU-UGGCGUUgGC-CGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 26994 | 0.71 | 0.63652 |
Target: 5'- cGAGCGGGCCGaccgggcucgguuCCGGCGCCgGguGGCg -3' miRNA: 3'- -CUUGCUUGGCguu----------GGCCGUGGgU--CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 111411 | 0.71 | 0.639571 |
Target: 5'- gGAACGAGgccgcagccuucucCCGgugccuuuccccccCGACCGGCACCC-GGCc -3' miRNA: 3'- -CUUGCUU--------------GGC--------------GUUGGCCGUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 105339 | 0.71 | 0.645671 |
Target: 5'- -uACGAccaAUCGCccGCCGGCugCCGGGa -3' miRNA: 3'- cuUGCU---UGGCGu-UGGCCGugGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 105430 | 0.71 | 0.645671 |
Target: 5'- cGACGAuCUGCGACCuGGCgcgcacguuuGCCCGGGa -3' miRNA: 3'- cUUGCUuGGCGUUGG-CCG----------UGGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 97096 | 0.7 | 0.655829 |
Target: 5'- -cACGAGCCGgGGCUGGCACaCCAc-- -3' miRNA: 3'- cuUGCUUGGCgUUGGCCGUG-GGUccg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 66832 | 0.7 | 0.655829 |
Target: 5'- cGggUGGccggugugcGCCGCcucCUGGgGCCCGGGCa -3' miRNA: 3'- -CuuGCU---------UGGCGuu-GGCCgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 21291 | 0.7 | 0.664956 |
Target: 5'- gGGACGGGagggcccCCGCGGCgGGCACCgAcgccGGCg -3' miRNA: 3'- -CUUGCUU-------GGCGUUGgCCGUGGgU----CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 96623 | 0.7 | 0.665968 |
Target: 5'- cGGCGAcaaCGCGACCGuCGCCgCGGGCc -3' miRNA: 3'- cUUGCUug-GCGUUGGCcGUGG-GUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 3429 | 0.7 | 0.665968 |
Target: 5'- ---gGAucCCGCGGCaGGCGgCCAGGCa -3' miRNA: 3'- cuugCUu-GGCGUUGgCCGUgGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 41486 | 0.7 | 0.665968 |
Target: 5'- cGAGCGucCCGCGuuauGCgGGCccagucguCCCAGGCc -3' miRNA: 3'- -CUUGCuuGGCGU----UGgCCGu-------GGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 71936 | 0.7 | 0.665968 |
Target: 5'- gGGGCGAguggacGCgCGCGACCGcGgGCCCuGGGCc -3' miRNA: 3'- -CUUGCU------UG-GCGUUGGC-CgUGGG-UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 147558 | 0.7 | 0.665968 |
Target: 5'- --cCGAGCCGCGcgccACCGucgcacGCGCCC-GGCa -3' miRNA: 3'- cuuGCUUGGCGU----UGGC------CGUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 3648 | 0.7 | 0.674061 |
Target: 5'- cGGCGAcccccucgucauCUGC-GCCGGCGCCgGGGCu -3' miRNA: 3'- cUUGCUu-----------GGCGuUGGCCGUGGgUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 92927 | 0.7 | 0.67608 |
Target: 5'- gGGGCGGGCCuggaGGCCGGgGCCCGcGCg -3' miRNA: 3'- -CUUGCUUGGcg--UUGGCCgUGGGUcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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