miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 84868 0.67 0.843426
Target:  5'- -cGCGcuccuCUGCGGCCGGCGggacUCUGGGCg -3'
miRNA:   3'- cuUGCuu---GGCGUUGGCCGU----GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24204 0.67 0.843426
Target:  5'- -uGCGcGCCuGCGACUGGCccGCCgaCGGGCc -3'
miRNA:   3'- cuUGCuUGG-CGUUGGCCG--UGG--GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 71061 0.67 0.843426
Target:  5'- -uACGAGCCGUcgcGACCuaGGgGCCUGGGg -3'
miRNA:   3'- cuUGCUUGGCG---UUGG--CCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 56517 0.67 0.843426
Target:  5'- cAGCGGcaggcCCGgGcCCGGCGuucCCCGGGCa -3'
miRNA:   3'- cUUGCUu----GGCgUuGGCCGU---GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2701 0.67 0.843426
Target:  5'- gGGGCu-GCCGCcGCCaGcCGCCCAGGg -3'
miRNA:   3'- -CUUGcuUGGCGuUGGcC-GUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 112859 0.67 0.843426
Target:  5'- gGAACGGuuuGCCGCGcacGCCGGggaccuagucccCGCCCccGGCc -3'
miRNA:   3'- -CUUGCU---UGGCGU---UGGCC------------GUGGGu-CCG- -5'
5556 3' -56.7 NC_001806.1 + 55225 0.67 0.842622
Target:  5'- cAGCGGcCCGgugacagaauaCAACggaggguCGGCGCCCGGGCc -3'
miRNA:   3'- cUUGCUuGGC-----------GUUG-------GCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 79697 0.67 0.842622
Target:  5'- --cCGGGCaCGCuccCUGGCgcgcgccACCCAGGCu -3'
miRNA:   3'- cuuGCUUG-GCGuu-GGCCG-------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 73108 0.67 0.835305
Target:  5'- --cCGAcccgGCCGgGccGCCGGuCGCCgAGGCg -3'
miRNA:   3'- cuuGCU----UGGCgU--UGGCC-GUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22470 0.67 0.835305
Target:  5'- -cAUGAGCCGCcgauacGACCGcGCGCagaaGGGCu -3'
miRNA:   3'- cuUGCUUGGCG------UUGGC-CGUGgg--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 78296 0.67 0.835305
Target:  5'- --cCGaAACCGaccccCUGGCGCCCuGGCg -3'
miRNA:   3'- cuuGC-UUGGCguu--GGCCGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 3357 0.67 0.835305
Target:  5'- uGGCGGGCCGgGccCCGGCcagcCCCGGGa -3'
miRNA:   3'- cUUGCUUGGCgUu-GGCCGu---GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 38798 0.67 0.835305
Target:  5'- --cCGuuCCGCuuccGCgGGgACCCGGGCg -3'
miRNA:   3'- cuuGCuuGGCGu---UGgCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 49639 0.67 0.835305
Target:  5'- gGGACGcguGCCGgGcCCGGaGCuCCGGGCg -3'
miRNA:   3'- -CUUGCu--UGGCgUuGGCCgUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100721 0.67 0.834483
Target:  5'- --gUGggUCaGCGccuccacGCCgGGCGCCCAGGUg -3'
miRNA:   3'- cuuGCuuGG-CGU-------UGG-CCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 76310 0.67 0.833659
Target:  5'- -cGCGGugCGCAACgacccggCGGCGgccgccgagcuugUCCGGGCa -3'
miRNA:   3'- cuUGCUugGCGUUG-------GCCGU-------------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3592 0.67 0.830345
Target:  5'- -cGCGGcGCCGUAcCCGGCgggcaccgcgcgcucGCCCGGuGCg -3'
miRNA:   3'- cuUGCU-UGGCGUuGGCCG---------------UGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 122183 0.67 0.827002
Target:  5'- cGGGcCGAACCG-AACCaGCcCCgCAGGCa -3'
miRNA:   3'- -CUU-GCUUGGCgUUGGcCGuGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 144215 0.67 0.827002
Target:  5'- --cCGAcACCGCAgaGCCGGCGCgCGcacucacaagcGGCa -3'
miRNA:   3'- cuuGCU-UGGCGU--UGGCCGUGgGU-----------CCG- -5'
5556 3' -56.7 NC_001806.1 + 33299 0.67 0.827002
Target:  5'- aGACcAGCgGcCGGCCGGCGCUUAGGg -3'
miRNA:   3'- cUUGcUUGgC-GUUGGCCGUGGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.