miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 105144 0.66 0.866624
Target:  5'- gGGGCGGccguGCCGCcccaggguGCCGaGC-CCCAGaGCa -3'
miRNA:   3'- -CUUGCU----UGGCGu-------UGGC-CGuGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 24790 0.67 0.859092
Target:  5'- cGACGAcggcccggggGCCcuGCcGCCGGCgccGCCCGGGa -3'
miRNA:   3'- cUUGCU----------UGG--CGuUGGCCG---UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 2394 0.67 0.859092
Target:  5'- uGGCGcauccaGGCCGcCAugCGGCGCagCGGGCc -3'
miRNA:   3'- cUUGC------UUGGC-GUugGCCGUGg-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 89787 0.67 0.859092
Target:  5'- gGGAgGGGCUgggGCgGACCGGCAcgccCCCAGGa -3'
miRNA:   3'- -CUUgCUUGG---CG-UUGGCCGU----GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 51602 0.67 0.859092
Target:  5'- aGGugGAGCUGC--CCGGCGgCCAGu- -3'
miRNA:   3'- -CUugCUUGGCGuuGGCCGUgGGUCcg -5'
5556 3' -56.7 NC_001806.1 + 81537 0.67 0.859092
Target:  5'- aGACGAGcCCGCGcauGCCaaGCGCCCGGacGCu -3'
miRNA:   3'- cUUGCUU-GGCGU---UGGc-CGUGGGUC--CG- -5'
5556 3' -56.7 NC_001806.1 + 33978 0.67 0.859092
Target:  5'- -uGCGGGCCGgGggucGCCGGgGCagGGGCg -3'
miRNA:   3'- cuUGCUUGGCgU----UGGCCgUGggUCCG- -5'
5556 3' -56.7 NC_001806.1 + 29957 0.67 0.859092
Target:  5'- -cGCGAGCCGC----GGCGCCgCGGGg -3'
miRNA:   3'- cuUGCUUGGCGuuggCCGUGG-GUCCg -5'
5556 3' -56.7 NC_001806.1 + 144988 0.67 0.859092
Target:  5'- cGGCGGACC-CAAggggccCCGGC-CCgGGGCc -3'
miRNA:   3'- cUUGCUUGGcGUU------GGCCGuGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 37771 0.67 0.859092
Target:  5'- cGGGCGccuuUCGCu-CCGGgGCCgGGGCg -3'
miRNA:   3'- -CUUGCuu--GGCGuuGGCCgUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 75229 0.67 0.858327
Target:  5'- cGGGCGcACCGCGucCUGGUcgacgcggugacgGCCCuGGGCg -3'
miRNA:   3'- -CUUGCuUGGCGUu-GGCCG-------------UGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 132439 0.67 0.858327
Target:  5'- cGGCGAGaaguucuCCGC-GCCGGCGCUCGucgcccuuuuccGGCa -3'
miRNA:   3'- cUUGCUU-------GGCGuUGGCCGUGGGU------------CCG- -5'
5556 3' -56.7 NC_001806.1 + 64409 0.67 0.858327
Target:  5'- --uUGGAUCGCAGCCacuccucaaaggaGGCcuCCCGGGUc -3'
miRNA:   3'- cuuGCUUGGCGUUGG-------------CCGu-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3189 0.67 0.854475
Target:  5'- cGGCGGccucGCUGCcGCCGGCcacgcgcagguccccGCgCAGGCg -3'
miRNA:   3'- cUUGCU----UGGCGuUGGCCG---------------UGgGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 147658 0.67 0.851357
Target:  5'- -cGCGGGgCggGCGGCCGGCuccgcCCCGGGg -3'
miRNA:   3'- cuUGCUUgG--CGUUGGCCGu----GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 68174 0.67 0.851357
Target:  5'- cGGACGGACC-UAugCaGCGCCUAuuGGCg -3'
miRNA:   3'- -CUUGCUUGGcGUugGcCGUGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 120841 0.67 0.851357
Target:  5'- --cCGGcauGgCGCAGCUGGgACCCcGGCg -3'
miRNA:   3'- cuuGCU---UgGCGUUGGCCgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 21949 0.67 0.851357
Target:  5'- -cACGGGCCcuucaCGGCCGGgcaGCCCcGGCg -3'
miRNA:   3'- cuUGCUUGGc----GUUGGCCg--UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 46197 0.67 0.851357
Target:  5'- cAGCGggUgGCGACUaaGGCcCCCGcGGCc -3'
miRNA:   3'- cUUGCuuGgCGUUGG--CCGuGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 136093 0.67 0.848998
Target:  5'- uGACGGACgcgguauugCGCAGCCGGCAgacgugcgcguguuCCCGGa- -3'
miRNA:   3'- cUUGCUUG---------GCGUUGGCCGU--------------GGGUCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.