Results 41 - 60 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 102512 | 0.79 | 0.246408 |
Target: 5'- --cCGAucACCGCGGCCaGGCACgCCAGGUa -3' miRNA: 3'- cuuGCU--UGGCGUUGG-CCGUG-GGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 79534 | 0.79 | 0.229245 |
Target: 5'- --cCGAAagcaCGCGGCCGGCGCCCguGGGCc -3' miRNA: 3'- cuuGCUUg---GCGUUGGCCGUGGG--UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 89524 | 0.8 | 0.207944 |
Target: 5'- cGGCGAGCUGCuGCgCGGCGCCCcGGCc -3' miRNA: 3'- cUUGCUUGGCGuUG-GCCGUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 81343 | 0.83 | 0.12878 |
Target: 5'- -cGCGGGCCGCAACCaGGCGgCCgGGGCg -3' miRNA: 3'- cuUGCUUGGCGUUGG-CCGU-GGgUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 1605 | 0.89 | 0.058373 |
Target: 5'- -cACGGGCCGCAGCgGcGCGCCCAGGCc -3' miRNA: 3'- cuUGCUUGGCGUUGgC-CGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 35548 | 0.75 | 0.396852 |
Target: 5'- cAGCGAGCCGC--UCGGCGCgCCcGGCg -3' miRNA: 3'- cUUGCUUGGCGuuGGCCGUG-GGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 2771 | 0.75 | 0.396852 |
Target: 5'- cGGGCGGGCCugcgccgcgGCGGCCcggGGCGCCgCGGGCu -3' miRNA: 3'- -CUUGCUUGG---------CGUUGG---CCGUGG-GUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 95413 | 0.74 | 0.477139 |
Target: 5'- aGGACGAagACCGUcGCCGcGgGCCCGGGg -3' miRNA: 3'- -CUUGCU--UGGCGuUGGC-CgUGGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 96486 | 0.74 | 0.467812 |
Target: 5'- ---gGggUCGCGGCCGcG-ACCCAGGCg -3' miRNA: 3'- cuugCuuGGCGUUGGC-CgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 65446 | 0.74 | 0.466884 |
Target: 5'- gGAGCGGgggauGCCGCGGCCcccggguccugggGGCGCCCGcGCa -3' miRNA: 3'- -CUUGCU-----UGGCGUUGG-------------CCGUGGGUcCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 146858 | 0.74 | 0.458578 |
Target: 5'- ---gGGACCGCGGCCcGCAgCCGGGUc -3' miRNA: 3'- cuugCUUGGCGUUGGcCGUgGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 80020 | 0.74 | 0.458578 |
Target: 5'- aGGCGGGCCGCAG-CGGCGCCUuacGCg -3' miRNA: 3'- cUUGCUUGGCGUUgGCCGUGGGuc-CG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 20460 | 0.74 | 0.449443 |
Target: 5'- --cCGAACCGgGAagUCGGgGCCCGGGCc -3' miRNA: 3'- cuuGCUUGGCgUU--GGCCgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 148110 | 0.74 | 0.440409 |
Target: 5'- --cCGAGCCGCGGCCGGCugggGGGCu -3' miRNA: 3'- cuuGCUUGGCGUUGGCCGugggUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 24511 | 0.74 | 0.439511 |
Target: 5'- --cCGGGCCGUgcuGCCGGCGCuggacggCCGGGCg -3' miRNA: 3'- cuuGCUUGGCGu--UGGCCGUG-------GGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 50534 | 0.74 | 0.43148 |
Target: 5'- uGGGCGAcACCGCAgcgcGCCGGCugCUcgccaacagcGGGCu -3' miRNA: 3'- -CUUGCU-UGGCGU----UGGCCGugGG----------UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 56986 | 0.75 | 0.422657 |
Target: 5'- cGGCGAgcaccaggagcGCCGCAuaGgCGGCGCCCAGuGCc -3' miRNA: 3'- cUUGCU-----------UGGCGU--UgGCCGUGGGUC-CG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 22106 | 0.75 | 0.42178 |
Target: 5'- uGGGCGAcaGCCGCccgGGCCucuggggGGCGCCCgAGGCg -3' miRNA: 3'- -CUUGCU--UGGCG---UUGG-------CCGUGGG-UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 24847 | 0.75 | 0.413943 |
Target: 5'- -cACGGGCCGCAG-CGGCACCgugcuGGCg -3' miRNA: 3'- cuUGCUUGGCGUUgGCCGUGGgu---CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 105881 | 0.75 | 0.405341 |
Target: 5'- -cAUGGACCGCAuguACUGGCGCgacacgaacaCCGGGCg -3' miRNA: 3'- cuUGCUUGGCGU---UGGCCGUG----------GGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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