miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 19202 0.67 0.818524
Target:  5'- --gUGAGCCGCA---GGUuuACCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCGUuggCCG--UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 20079 0.69 0.734727
Target:  5'- --cCGcAGCCGCucccgucguucguGGCCGGCGCCgucugCGGGCg -3'
miRNA:   3'- cuuGC-UUGGCG-------------UUGGCCGUGG-----GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 20173 0.66 0.873948
Target:  5'- --cCGGGcCCGCccccggGGCCGGCGCggagUCGGGCa -3'
miRNA:   3'- cuuGCUU-GGCG------UUGGCCGUG----GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 20460 0.74 0.449443
Target:  5'- --cCGAACCGgGAagUCGGgGCCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCgUU--GGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 20643 0.78 0.264622
Target:  5'- cAACGGGCCGCGGCCacgGGC-CCCcGGCg -3'
miRNA:   3'- cUUGCUUGGCGUUGG---CCGuGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 21123 0.66 0.873948
Target:  5'- aGAACaAGCaGCGccCCGGCucCCCGGGCc -3'
miRNA:   3'- -CUUGcUUGgCGUu-GGCCGu-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 21291 0.7 0.664956
Target:  5'- gGGACGGGagggcccCCGCGGCgGGCACCgAcgccGGCg -3'
miRNA:   3'- -CUUGCUU-------GGCGUUGgCCGUGGgU----CCG- -5'
5556 3' -56.7 NC_001806.1 + 21484 0.73 0.534875
Target:  5'- cGACGcAGCCGaCGccGCCGGCGaCCGGGCc -3'
miRNA:   3'- cUUGC-UUGGC-GU--UGGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 21568 0.69 0.716086
Target:  5'- -cACGGACCGCcugucGCC-GCGCCCGccGGCc -3'
miRNA:   3'- cuUGCUUGGCGu----UGGcCGUGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 21772 0.73 0.515322
Target:  5'- cGGGCGGgguccgucgAgCGCGgcGCCGGCAgccCCCGGGCg -3'
miRNA:   3'- -CUUGCU---------UgGCGU--UGGCCGU---GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 21895 0.72 0.564668
Target:  5'- -cGCGGGCCGCAucgagcgccGCCGG-GCCCGcgcGGCg -3'
miRNA:   3'- cuUGCUUGGCGU---------UGGCCgUGGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 21949 0.67 0.851357
Target:  5'- -cACGGGCCcuucaCGGCCGGgcaGCCCcGGCg -3'
miRNA:   3'- cuUGCUUGGc----GUUGGCCg--UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 22047 0.72 0.54475
Target:  5'- cGGgGAGCCGUGGcCCGGCG-CCGGGCc -3'
miRNA:   3'- cUUgCUUGGCGUU-GGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22106 0.75 0.42178
Target:  5'- uGGGCGAcaGCCGCccgGGCCucuggggGGCGCCCgAGGCg -3'
miRNA:   3'- -CUUGCU--UGGCG---UUGG-------CCGUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 22145 0.7 0.706168
Target:  5'- cGGAgGAGgCGCGacGCCGGUucgagGCCuCGGGCg -3'
miRNA:   3'- -CUUgCUUgGCGU--UGGCCG-----UGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22418 0.66 0.894619
Target:  5'- uGGCGGccgGCCGCuucgGCUGGgGCCUGGcGCa -3'
miRNA:   3'- cUUGCU---UGGCGu---UGGCCgUGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 22470 0.67 0.835305
Target:  5'- -cAUGAGCCGCcgauacGACCGcGCGCagaaGGGCu -3'
miRNA:   3'- cuUGCUUGGCG------UUGGC-CGUGgg--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 22565 0.69 0.754958
Target:  5'- uGACGGggGCCGCGGggagccCCGGCGCC--GGCg -3'
miRNA:   3'- cUUGCU--UGGCGUU------GGCCGUGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 22637 0.69 0.754958
Target:  5'- cGGGCGAGCgCGCGguGCCcgccggguacGGCGCCgCGGGg -3'
miRNA:   3'- -CUUGCUUG-GCGU--UGG----------CCGUGG-GUCCg -5'
5556 3' -56.7 NC_001806.1 + 22767 0.73 0.534875
Target:  5'- cGACGAcGCCGgGcGCC-GCGCCCAGGCc -3'
miRNA:   3'- cUUGCU-UGGCgU-UGGcCGUGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.