miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 3456 0.7 0.686157
Target:  5'- cGACGGcCaCGCGGCCGGCcugggcgcggcGCCC-GGCg -3'
miRNA:   3'- cUUGCUuG-GCGUUGGCCG-----------UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 3592 0.67 0.830345
Target:  5'- -cGCGGcGCCGUAcCCGGCgggcaccgcgcgcucGCCCGGuGCg -3'
miRNA:   3'- cuUGCU-UGGCGUuGGCCG---------------UGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 3648 0.7 0.674061
Target:  5'- cGGCGAcccccucgucauCUGC-GCCGGCGCCgGGGCu -3'
miRNA:   3'- cUUGCUu-----------GGCGuUGGCCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3833 0.68 0.792118
Target:  5'- aAGCGGccgGCCGCca-UGGCguaGCCCAGGUg -3'
miRNA:   3'- cUUGCU---UGGCGuugGCCG---UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3894 0.68 0.772858
Target:  5'- uGAAgGAGCUGCuguugcGCgCGGCGCCCgagauccggaagcAGGCc -3'
miRNA:   3'- -CUUgCUUGGCGu-----UG-GCCGUGGG-------------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 4030 0.67 0.818524
Target:  5'- aGGGCGuACUGCuGCgCGGCgucgcccaGCUCGGGCg -3'
miRNA:   3'- -CUUGCuUGGCGuUG-GCCG--------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 4124 0.67 0.818524
Target:  5'- cGGGCGccccccagaGGCCcggGCGGCUGuCGCCCAGGCc -3'
miRNA:   3'- -CUUGC---------UUGG---CGUUGGCcGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 4314 0.68 0.791214
Target:  5'- cGugGcgUCGCGGCCGGCcaccgccgcgcggGCCC-GGCg -3'
miRNA:   3'- cUugCuuGGCGUUGGCCG-------------UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 4368 0.68 0.801073
Target:  5'- -cGCGGagGCCGCGgggguccucGCCGcCGCCCGGGg -3'
miRNA:   3'- cuUGCU--UGGCGU---------UGGCcGUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 5088 0.69 0.744414
Target:  5'- gGggUGGGCgGCGGCCcgucgguGGgGCCCGGGg -3'
miRNA:   3'- -CuuGCUUGgCGUUGG-------CCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 5571 0.69 0.7357
Target:  5'- -cACGAccCCGCcccgacGCCGGCACgCCGGGg -3'
miRNA:   3'- cuUGCUu-GGCGu-----UGGCCGUG-GGUCCg -5'
5556 3' -56.7 NC_001806.1 + 5762 0.72 0.54475
Target:  5'- gGAACGGGCaGgGGgCGGgGCCCGGGCc -3'
miRNA:   3'- -CUUGCUUGgCgUUgGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 6060 0.71 0.59488
Target:  5'- --cCGAcuCCGC-GCCGGCcccgggggcggGCCCGGGCg -3'
miRNA:   3'- cuuGCUu-GGCGuUGGCCG-----------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 6225 0.66 0.881059
Target:  5'- gGAGCGGACgGCGucggcAUCGcGaCGCCCcGGCu -3'
miRNA:   3'- -CUUGCUUGgCGU-----UGGC-C-GUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 7462 0.66 0.869579
Target:  5'- -cGCGAACCaCGuaCGGCucgcgggucuguauaGCCCGGGCa -3'
miRNA:   3'- cuUGCUUGGcGUugGCCG---------------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 9012 0.66 0.866624
Target:  5'- aGGCGGACCacCGGCCcuuuauGCGCCuCGGGCa -3'
miRNA:   3'- cUUGCUUGGc-GUUGGc-----CGUGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 12787 0.66 0.873948
Target:  5'- -cGCccACCGC-GCCGGCGaUCAGGCc -3'
miRNA:   3'- cuUGcuUGGCGuUGGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 13252 0.72 0.583765
Target:  5'- -cACGAGCCGCAgguacguGCCGGCGgUCucaaacgcggGGGCg -3'
miRNA:   3'- cuUGCUUGGCGU-------UGGCCGUgGG----------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 17145 0.69 0.745378
Target:  5'- cGGACGccuCCGCuGCCGGuCGCUCcaaGGGCc -3'
miRNA:   3'- -CUUGCuu-GGCGuUGGCC-GUGGG---UCCG- -5'
5556 3' -56.7 NC_001806.1 + 18433 0.7 0.686157
Target:  5'- -cGCGAcCCGCcccagAAUCGGauggGCCCGGGCg -3'
miRNA:   3'- cuUGCUuGGCG-----UUGGCCg---UGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.