miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 1280 0.69 0.754958
Target:  5'- cGAACGcGCCGCcgUCGuCuucguCCCAGGCg -3'
miRNA:   3'- -CUUGCuUGGCGuuGGCcGu----GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1439 0.71 0.605013
Target:  5'- cGGGCGGcGCCgGCGGCagGGCcCCCGGGCc -3'
miRNA:   3'- -CUUGCU-UGG-CGUUGg-CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1528 0.66 0.893304
Target:  5'- cGGGCGcaaaagucccuCCGCGGCCcGCGCcaCCGGGCc -3'
miRNA:   3'- -CUUGCuu---------GGCGUUGGcCGUG--GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1605 0.89 0.058373
Target:  5'- -cACGGGCCGCAGCgGcGCGCCCAGGCc -3'
miRNA:   3'- cuUGCUUGGCGUUGgC-CGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1651 0.71 0.625332
Target:  5'- -uGCGAGugggccuccuccUCGCAGaaguCCGGCGCgCCGGGCg -3'
miRNA:   3'- cuUGCUU------------GGCGUU----GGCCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1753 0.66 0.893962
Target:  5'- cGGCGGuACuCGCGcggggacaugggcACCGGCGugUCCGGGCc -3'
miRNA:   3'- cUUGCU-UG-GCGU-------------UGGCCGU--GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1982 0.69 0.7357
Target:  5'- cGGCGGGCaGCAGCU-GCACgCCAGGUa -3'
miRNA:   3'- cUUGCUUGgCGUUGGcCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2008 0.67 0.818524
Target:  5'- aGGCGugcuGCCGCGacACCGcGgGCCCGucGGCg -3'
miRNA:   3'- cUUGCu---UGGCGU--UGGC-CgUGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 2074 0.73 0.505654
Target:  5'- cGAUGAGCCGCcggucGCCGGCGCU--GGCg -3'
miRNA:   3'- cUUGCUUGGCGu----UGGCCGUGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 2230 0.66 0.88795
Target:  5'- --cCGGcCCGCAcaGCCGGUugGCCaGGGCc -3'
miRNA:   3'- cuuGCUuGGCGU--UGGCCG--UGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2394 0.67 0.859092
Target:  5'- uGGCGcauccaGGCCGcCAugCGGCGCagCGGGCc -3'
miRNA:   3'- cUUGC------UUGGC-GUugGCCGUGg-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2701 0.67 0.843426
Target:  5'- gGGGCu-GCCGCcGCCaGcCGCCCAGGg -3'
miRNA:   3'- -CUUGcuUGGCGuUGGcC-GUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 2740 0.66 0.873948
Target:  5'- cGGCGGGCCggcGCGACaCGGC-CaCgGGGCg -3'
miRNA:   3'- cUUGCUUGG---CGUUG-GCCGuG-GgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2771 0.75 0.396852
Target:  5'- cGGGCGGGCCugcgccgcgGCGGCCcggGGCGCCgCGGGCu -3'
miRNA:   3'- -CUUGCUUGG---------CGUUGG---CCGUGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2925 0.76 0.356166
Target:  5'- -cGCGGGCCGCcGCCuccgGGCGgCCGGGCc -3'
miRNA:   3'- cuUGCUUGGCGuUGG----CCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3122 0.7 0.686157
Target:  5'- -cGCGGgucccGCgGCAGCgCGGgGCCCAGGg -3'
miRNA:   3'- cuUGCU-----UGgCGUUG-GCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 3189 0.67 0.854475
Target:  5'- cGGCGGccucGCUGCcGCCGGCcacgcgcagguccccGCgCAGGCg -3'
miRNA:   3'- cUUGCU----UGGCGuUGGCCG---------------UGgGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3256 0.76 0.372083
Target:  5'- -cACGAACCGCAGCuCGcgcagccacGCGCgCAGGCg -3'
miRNA:   3'- cuUGCUUGGCGUUG-GC---------CGUGgGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3357 0.67 0.835305
Target:  5'- uGGCGGGCCGgGccCCGGCcagcCCCGGGa -3'
miRNA:   3'- cUUGCUUGGCgUu-GGCCGu---GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 3429 0.7 0.665968
Target:  5'- ---gGAucCCGCGGCaGGCGgCCAGGCa -3'
miRNA:   3'- cuugCUu-GGCGUUGgCCGUgGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.