miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 151531 0.69 0.745378
Target:  5'- ---gGGACgGCGcCCGuGgGCCCGGGCg -3'
miRNA:   3'- cuugCUUGgCGUuGGC-CgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 151146 0.66 0.88795
Target:  5'- -cGCGcgUCGCAggcGCaGGCGCgCCAGGUg -3'
miRNA:   3'- cuUGCuuGGCGU---UGgCCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 150988 0.74 0.477139
Target:  5'- -cACGAGCCGC----GGCGCgCCAGGCg -3'
miRNA:   3'- cuUGCUUGGCGuuggCCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 150896 0.66 0.866624
Target:  5'- -cACGGGCCu---CgGGC-CCCAGGCa -3'
miRNA:   3'- cuUGCUUGGcguuGgCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 150854 0.7 0.695188
Target:  5'- aGAcCGAguucGCCG-GGCCGGCuccgcgggccaggGCCCGGGCa -3'
miRNA:   3'- -CUuGCU----UGGCgUUGGCCG-------------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 148110 0.74 0.440409
Target:  5'- --cCGAGCCGCGGCCGGCugggGGGCu -3'
miRNA:   3'- cuuGCUUGGCGUUGGCCGugggUCCG- -5'
5556 3' -56.7 NC_001806.1 + 147658 0.67 0.851357
Target:  5'- -cGCGGGgCggGCGGCCGGCuccgcCCCGGGg -3'
miRNA:   3'- cuUGCUUgG--CGUUGGCCGu----GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 147558 0.7 0.665968
Target:  5'- --cCGAGCCGCGcgccACCGucgcacGCGCCC-GGCa -3'
miRNA:   3'- cuuGCUUGGCGU----UGGC------CGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 146858 0.74 0.458578
Target:  5'- ---gGGACCGCGGCCcGCAgCCGGGUc -3'
miRNA:   3'- cuugCUUGGCGUUGGcCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 144988 0.67 0.859092
Target:  5'- cGGCGGACC-CAAggggccCCGGC-CCgGGGCc -3'
miRNA:   3'- cUUGCUUGGcGUU------GGCCGuGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 144928 0.69 0.754958
Target:  5'- aGAUGAacacucgggguuACCGCcaacGGCCGGCcCCCGuGGCg -3'
miRNA:   3'- cUUGCU------------UGGCG----UUGGCCGuGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 144215 0.67 0.827002
Target:  5'- --cCGAcACCGCAgaGCCGGCGCgCGcacucacaagcGGCa -3'
miRNA:   3'- cuuGCU-UGGCGU--UGGCCGUGgGU-----------CCG- -5'
5556 3' -56.7 NC_001806.1 + 143388 0.67 0.827002
Target:  5'- cGGCGAcaaCGCuccCCGGCGgCCGGGUc -3'
miRNA:   3'- cUUGCUug-GCGuu-GGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 139210 0.72 0.574701
Target:  5'- cGGACGAGCUGCGGaggCGGCACgCGacGGCc -3'
miRNA:   3'- -CUUGCUUGGCGUUg--GCCGUGgGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 136532 0.76 0.380222
Target:  5'- uGACGGGCCGCucgggccgcCCGGCGCaaagCAGGCg -3'
miRNA:   3'- cUUGCUUGGCGuu-------GGCCGUGg---GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 136093 0.67 0.848998
Target:  5'- uGACGGACgcgguauugCGCAGCCGGCAgacgugcgcguguuCCCGGa- -3'
miRNA:   3'- cUUGCUUG---------GCGUUGGCCGU--------------GGGUCcg -5'
5556 3' -56.7 NC_001806.1 + 136030 0.69 0.745378
Target:  5'- uAACGAcCCGCGcggcACCGGCcACCCcGcGCu -3'
miRNA:   3'- cUUGCUuGGCGU----UGGCCG-UGGGuC-CG- -5'
5556 3' -56.7 NC_001806.1 + 135590 0.68 0.801073
Target:  5'- ----cGGCCGCGcgcuGCUGGCGCuCCAGGg -3'
miRNA:   3'- cuugcUUGGCGU----UGGCCGUG-GGUCCg -5'
5556 3' -56.7 NC_001806.1 + 135546 0.7 0.696189
Target:  5'- aGGGCGGcuGCCGCAuccACCGGuCACggacucggccgCCAGGUc -3'
miRNA:   3'- -CUUGCU--UGGCGU---UGGCC-GUG-----------GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 135404 0.7 0.706168
Target:  5'- ---aGAGgCGCGACaGGCGCuCCAGGUc -3'
miRNA:   3'- cuugCUUgGCGUUGgCCGUG-GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.