miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 50534 0.74 0.43148
Target:  5'- uGGGCGAcACCGCAgcgcGCCGGCugCUcgccaacagcGGGCu -3'
miRNA:   3'- -CUUGCU-UGGCGU----UGGCCGugGG----------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 24511 0.74 0.439511
Target:  5'- --cCGGGCCGUgcuGCCGGCGCuggacggCCGGGCg -3'
miRNA:   3'- cuuGCUUGGCGu--UGGCCGUG-------GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 148110 0.74 0.440409
Target:  5'- --cCGAGCCGCGGCCGGCugggGGGCu -3'
miRNA:   3'- cuuGCUUGGCGUUGGCCGugggUCCG- -5'
5556 3' -56.7 NC_001806.1 + 20460 0.74 0.449443
Target:  5'- --cCGAACCGgGAagUCGGgGCCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCgUU--GGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 80020 0.74 0.458578
Target:  5'- aGGCGGGCCGCAG-CGGCGCCUuacGCg -3'
miRNA:   3'- cUUGCUUGGCGUUgGCCGUGGGuc-CG- -5'
5556 3' -56.7 NC_001806.1 + 146858 0.74 0.458578
Target:  5'- ---gGGACCGCGGCCcGCAgCCGGGUc -3'
miRNA:   3'- cuugCUUGGCGUUGGcCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 65446 0.74 0.466884
Target:  5'- gGAGCGGgggauGCCGCGGCCcccggguccugggGGCGCCCGcGCa -3'
miRNA:   3'- -CUUGCU-----UGGCGUUGG-------------CCGUGGGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 96486 0.74 0.467812
Target:  5'- ---gGggUCGCGGCCGcG-ACCCAGGCg -3'
miRNA:   3'- cuugCuuGGCGUUGGC-CgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 95413 0.74 0.477139
Target:  5'- aGGACGAagACCGUcGCCGcGgGCCCGGGg -3'
miRNA:   3'- -CUUGCU--UGGCGuUGGC-CgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 150988 0.74 0.477139
Target:  5'- -cACGAGCCGC----GGCGCgCCAGGCg -3'
miRNA:   3'- cuUGCUUGGCGuuggCCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 125804 0.73 0.496065
Target:  5'- --gUGGACCGCGGacucggUCGGCACCUAuGGCg -3'
miRNA:   3'- cuuGCUUGGCGUU------GGCCGUGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 125504 0.73 0.496065
Target:  5'- --cCGGGCCGCGucGCCGGCACUUucugacgccucaGGGCc -3'
miRNA:   3'- cuuGCUUGGCGU--UGGCCGUGGG------------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 2074 0.73 0.505654
Target:  5'- cGAUGAGCCGCcggucGCCGGCGCU--GGCg -3'
miRNA:   3'- cUUGCUUGGCGu----UGGCCGUGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 24681 0.73 0.515322
Target:  5'- aGGCGGugCGC-GCCGGCccgGCCCGguGGCg -3'
miRNA:   3'- cUUGCUugGCGuUGGCCG---UGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 85697 0.73 0.515322
Target:  5'- cGACGAguuuccuccGCCGUAgcGCCGGCACCCAccGCc -3'
miRNA:   3'- cUUGCU---------UGGCGU--UGGCCGUGGGUc-CG- -5'
5556 3' -56.7 NC_001806.1 + 21772 0.73 0.515322
Target:  5'- cGGGCGGgguccgucgAgCGCGgcGCCGGCAgccCCCGGGCg -3'
miRNA:   3'- -CUUGCU---------UgGCGU--UGGCCGU---GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 67159 0.73 0.515322
Target:  5'- aGGGCGGucGCCuccauCAGCUGGC-CCCAGGCc -3'
miRNA:   3'- -CUUGCU--UGGc----GUUGGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 41196 0.73 0.52898
Target:  5'- gGAGCuGAACCGCAGCCaGaGCcccgcgccuaaagugGCCCAGGg -3'
miRNA:   3'- -CUUG-CUUGGCGUUGG-C-CG---------------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 21484 0.73 0.534875
Target:  5'- cGACGcAGCCGaCGccGCCGGCGaCCGGGCc -3'
miRNA:   3'- cUUGC-UUGGC-GU--UGGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22767 0.73 0.534875
Target:  5'- cGACGAcGCCGgGcGCC-GCGCCCAGGCc -3'
miRNA:   3'- cUUGCU-UGGCgU-UGGcCGUGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.