miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 22863 0.66 0.880357
Target:  5'- cGGCGAccuggcgGCCGUcccggggcuGGCCGGgGCCC-GGCc -3'
miRNA:   3'- cUUGCU-------UGGCG---------UUGGCCgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 22992 0.66 0.897224
Target:  5'- -cGCGAGCUGCGguucgugcgcgacgcGCUGGUGCUCAuGCg -3'
miRNA:   3'- cuUGCUUGGCGU---------------UGGCCGUGGGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 23086 0.67 0.818524
Target:  5'- -uGCGcGCCGUGagccuggucGCCGGgGCCCuGGGCc -3'
miRNA:   3'- cuUGCuUGGCGU---------UGGCCgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 23285 0.66 0.883842
Target:  5'- gGGGCGcAAgCGCAAgagucccggcccggcCCGGcCGCCCggAGGCg -3'
miRNA:   3'- -CUUGC-UUgGCGUU---------------GGCC-GUGGG--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 23581 0.7 0.686157
Target:  5'- cGGCGGcgcCCGCGGCCGcCGCCCuggAGGCc -3'
miRNA:   3'- cUUGCUu--GGCGUUGGCcGUGGG---UCCG- -5'
5556 3' -56.7 NC_001806.1 + 23709 0.7 0.686157
Target:  5'- --uCGAucGCCGCGcggugcGCCGGgcccgcccccgcCGCCCAGGCc -3'
miRNA:   3'- cuuGCU--UGGCGU------UGGCC------------GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 23923 0.68 0.801073
Target:  5'- cGGGCGAggACC-UGGCCGGCGgCgGGGCc -3'
miRNA:   3'- -CUUGCU--UGGcGUUGGCCGUgGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 23983 0.68 0.801073
Target:  5'- cGGCGGGCUGUccugccuGCUGGCGgCCCuGGCc -3'
miRNA:   3'- cUUGCUUGGCGu------UGGCCGU-GGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 24026 0.72 0.584773
Target:  5'- -uGCGGGCCG-GACaCGGcCGCCUGGGCg -3'
miRNA:   3'- cuUGCUUGGCgUUG-GCC-GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24204 0.67 0.843426
Target:  5'- -uGCGcGCCuGCGACUGGCccGCCgaCGGGCc -3'
miRNA:   3'- cuUGCuUGG-CGUUGGCCG--UGG--GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24312 0.68 0.763488
Target:  5'- -cGCGGgaccugcGCCGCAcgguGCUGGC-CUCGGGCc -3'
miRNA:   3'- cuUGCU-------UGGCGU----UGGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24511 0.74 0.439511
Target:  5'- --cCGGGCCGUgcuGCCGGCGCuggacggCCGGGCg -3'
miRNA:   3'- cuuGCUUGGCGu--UGGCCGUG-------GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24639 0.69 0.7357
Target:  5'- uGGGCGcgccGCUGCGGCCcguguacguGGCGCUgGGGCg -3'
miRNA:   3'- -CUUGCu---UGGCGUUGG---------CCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24681 0.73 0.515322
Target:  5'- aGGCGGugCGC-GCCGGCccgGCCCGguGGCg -3'
miRNA:   3'- cUUGCUugGCGuUGGCCG---UGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 24710 0.66 0.887271
Target:  5'- -cGCGGGCCGCGgagggacuuuugcGCCcGCGCCCugcuGGa -3'
miRNA:   3'- cuUGCUUGGCGU-------------UGGcCGUGGGu---CCg -5'
5556 3' -56.7 NC_001806.1 + 24790 0.67 0.859092
Target:  5'- cGACGAcggcccggggGCCcuGCcGCCGGCgccGCCCGGGa -3'
miRNA:   3'- cUUGCU----------UGG--CGuUGGCCG---UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 24847 0.75 0.413943
Target:  5'- -cACGGGCCGCAG-CGGCACCgugcuGGCg -3'
miRNA:   3'- cuUGCUUGGCGUUgGCCGUGGgu---CCG- -5'
5556 3' -56.7 NC_001806.1 + 26248 0.69 0.716086
Target:  5'- aAGCGGug-GCGGCgGGCAgCCCGGGCc -3'
miRNA:   3'- cUUGCUuggCGUUGgCCGU-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 26399 0.76 0.380222
Target:  5'- -cGCGGcccccGCCGCccCCGGcCGCCCGGGCc -3'
miRNA:   3'- cuUGCU-----UGGCGuuGGCC-GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 26614 0.69 0.72985
Target:  5'- cGACGAcugGCCGgAcagccccccgcccgaGCCGGCGCCagAGGCc -3'
miRNA:   3'- cUUGCU---UGGCgU---------------UGGCCGUGGg-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.