Results 81 - 100 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5557 | 5' | -55.8 | NC_001806.1 | + | 3008 | 0.69 | 0.80263 |
Target: 5'- gCCGCCAgCGCGucGGCgGCGuccggugcGCUGg -3' miRNA: 3'- -GGCGGUgGCGCu-UCGgCGCuau-----UGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 24221 | 0.69 | 0.80263 |
Target: 5'- cCCGCCGacgggcCCGCGguGUCGCGGcAGCa- -3' miRNA: 3'- -GGCGGU------GGCGCuuCGGCGCUaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 82540 | 0.69 | 0.80263 |
Target: 5'- cCCGCCAUgGCGc--CCGCGAUGGgaGc -3' miRNA: 3'- -GGCGGUGgCGCuucGGCGCUAUUgaC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 4826 | 0.69 | 0.80263 |
Target: 5'- uCCGggGCgGCGAGGCCGCGGggucgGGCg- -3' miRNA: 3'- -GGCggUGgCGCUUCGGCGCUa----UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 33002 | 0.69 | 0.80263 |
Target: 5'- gCCGCCACgGgGGccGGCCguugGCGGUAACc- -3' miRNA: 3'- -GGCGGUGgCgCU--UCGG----CGCUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 21333 | 0.69 | 0.80263 |
Target: 5'- aCGCCggggacGCCGUcucGCCGCGAcAGCUGg -3' miRNA: 3'- gGCGG------UGGCGcuuCGGCGCUaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 135132 | 0.69 | 0.801745 |
Target: 5'- gUGCUggacguCCGCGAcgaacagGGCCGCGAUGuCUGu -3' miRNA: 3'- gGCGGu-----GGCGCU-------UCGGCGCUAUuGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 147377 | 0.69 | 0.793707 |
Target: 5'- cCUGCCGgCGCGAGGgggggaCGCGugGACUGg -3' miRNA: 3'- -GGCGGUgGCGCUUCg-----GCGCuaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 4631 | 0.69 | 0.792806 |
Target: 5'- gCCGCCACCGgccgugaCGAcgucuCCGCGGcGGCUGg -3' miRNA: 3'- -GGCGGUGGC-------GCUuc---GGCGCUaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 23030 | 0.69 | 0.78464 |
Target: 5'- gCGCCugCGCGggGaCCuGCGcGUGGCc- -3' miRNA: 3'- gGCGGugGCGCuuC-GG-CGC-UAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 72597 | 0.69 | 0.78464 |
Target: 5'- gCCGCCACCGaccCGGGcccGUCGCGAcGACa- -3' miRNA: 3'- -GGCGGUGGC---GCUU---CGGCGCUaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 23078 | 0.69 | 0.775437 |
Target: 5'- -gGCCGCCGUGcgcGCCGUGAgc-CUGg -3' miRNA: 3'- ggCGGUGGCGCuu-CGGCGCUauuGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 26391 | 0.69 | 0.772651 |
Target: 5'- gCCGCCAUCGCGGcccccgccgcccccGGCCGCccgGGCc- -3' miRNA: 3'- -GGCGGUGGCGCU--------------UCGGCGcuaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 26778 | 0.7 | 0.766108 |
Target: 5'- uCCGCCugCGCGucaCCGCGG-AGCa- -3' miRNA: 3'- -GGCGGugGCGCuucGGCGCUaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 23742 | 0.7 | 0.747107 |
Target: 5'- gCCGCCcagGCCGCGugcGGCgGCGGcGACg- -3' miRNA: 3'- -GGCGG---UGGCGCu--UCGgCGCUaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 75623 | 0.7 | 0.747107 |
Target: 5'- gCGCCA-CGCGAcGCCGCGccGACg- -3' miRNA: 3'- gGCGGUgGCGCUuCGGCGCuaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 79102 | 0.7 | 0.747107 |
Target: 5'- gCGCCACCGaCGAGGaccccuuccUCGCGcgAGCUa -3' miRNA: 3'- gGCGGUGGC-GCUUC---------GGCGCuaUUGAc -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 104000 | 0.7 | 0.747107 |
Target: 5'- uUGUCACC-CGGAGgCGCGAggGACUGc -3' miRNA: 3'- gGCGGUGGcGCUUCgGCGCUa-UUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 150673 | 0.7 | 0.727709 |
Target: 5'- gCC-CCGCCGCGcuggcGGCCGcCGAUGGCc- -3' miRNA: 3'- -GGcGGUGGCGCu----UCGGC-GCUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 30784 | 0.7 | 0.717883 |
Target: 5'- uCCGCCuCCucggGCGggGCCGuCGGUGccCUGg -3' miRNA: 3'- -GGCGGuGG----CGCuuCGGC-GCUAUu-GAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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