miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 96733 0.68 0.844804
Target:  5'- gCGCCACgGUGGugcaguucgagcAGCCGCGcc-GCUGc -3'
miRNA:   3'- gGCGGUGgCGCU------------UCGGCGCuauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 1384 0.68 0.844804
Target:  5'- cCCGCCGCCGCc-AGCa-CGGUGccGCUGc -3'
miRNA:   3'- -GGCGGUGGCGcuUCGgcGCUAU--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 24808 0.68 0.844804
Target:  5'- cCUGCCGCCgGCGccGCCcGgGAUucGCUGg -3'
miRNA:   3'- -GGCGGUGG-CGCuuCGG-CgCUAu-UGAC- -5'
5557 5' -55.8 NC_001806.1 + 51108 0.68 0.844804
Target:  5'- gCCGCCGCCcugcggGCgcacgugucgggGAGGCgCGCGAccgGGCUGg -3'
miRNA:   3'- -GGCGGUGG------CG------------CUUCG-GCGCUa--UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 100648 0.68 0.844804
Target:  5'- gCCGCCGCCGCucGGCCaccaggcuccaGCGGUcccgcAGCa- -3'
miRNA:   3'- -GGCGGUGGCGcuUCGG-----------CGCUA-----UUGac -5'
5557 5' -55.8 NC_001806.1 + 77836 0.68 0.844804
Target:  5'- gCGCCACCGCaggcgagauggGggGCCuCGAUGGa-- -3'
miRNA:   3'- gGCGGUGGCG-----------CuuCGGcGCUAUUgac -5'
5557 5' -55.8 NC_001806.1 + 29802 0.68 0.836721
Target:  5'- gCGCCGCCGCGccccCCGUGAcgGGCg- -3'
miRNA:   3'- gGCGGUGGCGCuuc-GGCGCUa-UUGac -5'
5557 5' -55.8 NC_001806.1 + 22456 0.68 0.836721
Target:  5'- gCgGCCGCCGUGGccaugAGCCGcCGAUAc--- -3'
miRNA:   3'- -GgCGGUGGCGCU-----UCGGC-GCUAUugac -5'
5557 5' -55.8 NC_001806.1 + 98023 0.68 0.836721
Target:  5'- uCgGCCACCGUG-GGCCgGCGGgugAGCg- -3'
miRNA:   3'- -GgCGGUGGCGCuUCGG-CGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 45106 0.68 0.836721
Target:  5'- uCCGCCcCCGCGAguagcgacGGCCGUGu--GCc- -3'
miRNA:   3'- -GGCGGuGGCGCU--------UCGGCGCuauUGac -5'
5557 5' -55.8 NC_001806.1 + 30745 0.68 0.820012
Target:  5'- gCCGCCucuuccGCCGcCGggGCCGCGu------ -3'
miRNA:   3'- -GGCGG------UGGC-GCuuCGGCGCuauugac -5'
5557 5' -55.8 NC_001806.1 + 95422 0.68 0.820012
Target:  5'- aCCGUCGCCGCG-GGCC-CGGggGGCa- -3'
miRNA:   3'- -GGCGGUGGCGCuUCGGcGCUa-UUGac -5'
5557 5' -55.8 NC_001806.1 + 96636 0.68 0.820012
Target:  5'- aCCGUCGCCGCG-GGCCacgccacccuGCGcgAGCa- -3'
miRNA:   3'- -GGCGGUGGCGCuUCGG----------CGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 70401 0.68 0.820012
Target:  5'- aCGCCAUCGUGcuGCUGCGGcuGCa- -3'
miRNA:   3'- gGCGGUGGCGCuuCGGCGCUauUGac -5'
5557 5' -55.8 NC_001806.1 + 122872 0.68 0.819159
Target:  5'- -aGCCGCCGCGccacggccgagaaGAGCgGCGAguGCUc -3'
miRNA:   3'- ggCGGUGGCGC-------------UUCGgCGCUauUGAc -5'
5557 5' -55.8 NC_001806.1 + 116683 0.69 0.811401
Target:  5'- cCCGUaaaCGCcGAGCUGCGAUcGCUGg -3'
miRNA:   3'- -GGCGgugGCGcUUCGGCGCUAuUGAC- -5'
5557 5' -55.8 NC_001806.1 + 70852 0.69 0.811401
Target:  5'- -aGCCGCgGCGcGGCCGCGG-GACc- -3'
miRNA:   3'- ggCGGUGgCGCuUCGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 31095 0.69 0.811401
Target:  5'- aCC-CgGCUGCG-GGCCGCGGUccccGGCUGg -3'
miRNA:   3'- -GGcGgUGGCGCuUCGGCGCUA----UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 88616 0.69 0.811401
Target:  5'- uCCGCCucgaagugguCCGCGGAgauGCCGCGG-AACg- -3'
miRNA:   3'- -GGCGGu---------GGCGCUU---CGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 57389 0.69 0.806158
Target:  5'- gCUGUCGuuGCGGagcaucccgcgccuuGGCCGUGAUGGCa- -3'
miRNA:   3'- -GGCGGUggCGCU---------------UCGGCGCUAUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.