miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 50088 0.67 0.882236
Target:  5'- gCGUC-CCGuCGggGCCGCGGccgugccguuACUGa -3'
miRNA:   3'- gGCGGuGGC-GCuuCGGCGCUau--------UGAC- -5'
5557 5' -55.8 NC_001806.1 + 4283 0.67 0.882236
Target:  5'- cCCGCCggggcugcccgGCCGUGAAGCgGCccGUGGCg- -3'
miRNA:   3'- -GGCGG-----------UGGCGCUUCGgCGc-UAUUGac -5'
5557 5' -55.8 NC_001806.1 + 91697 0.67 0.882236
Target:  5'- gCGCCGcCCGCGGAGCCaucgGCGucuucggGACc- -3'
miRNA:   3'- gGCGGU-GGCGCUUCGG----CGCua-----UUGac -5'
5557 5' -55.8 NC_001806.1 + 88969 0.67 0.882236
Target:  5'- aCGCCGCCccacaggcGCGAGcGCCGCGGc----- -3'
miRNA:   3'- gGCGGUGG--------CGCUU-CGGCGCUauugac -5'
5557 5' -55.8 NC_001806.1 + 71951 0.67 0.882236
Target:  5'- gCGCgACCGCGGGcccugggccGCCGCGcAUGugUu -3'
miRNA:   3'- gGCGgUGGCGCUU---------CGGCGC-UAUugAc -5'
5557 5' -55.8 NC_001806.1 + 16495 0.67 0.882236
Target:  5'- uUGCCGCCGCGGcugauggcucgAGCCGCcucc-CUGu -3'
miRNA:   3'- gGCGGUGGCGCU-----------UCGGCGcuauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 50004 0.67 0.875167
Target:  5'- gCGCCuucaCGCGGAGgCGCGcgGGuCUGa -3'
miRNA:   3'- gGCGGug--GCGCUUCgGCGCuaUU-GAC- -5'
5557 5' -55.8 NC_001806.1 + 34542 0.67 0.874448
Target:  5'- gCCGCUcguaagaGCCGCGAcccGGCCGcCGGggAGCg- -3'
miRNA:   3'- -GGCGG-------UGGCGCU---UCGGC-GCUa-UUGac -5'
5557 5' -55.8 NC_001806.1 + 101473 0.67 0.867884
Target:  5'- aCGCCaACCGCcGGGCCGgGA---CUGg -3'
miRNA:   3'- gGCGG-UGGCGcUUCGGCgCUauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 22784 0.67 0.867144
Target:  5'- gCGCCcaggccgGCCGCGuGGCCGuCGAgugcCUGg -3'
miRNA:   3'- gGCGG-------UGGCGCuUCGGC-GCUauu-GAC- -5'
5557 5' -55.8 NC_001806.1 + 21910 0.68 0.860392
Target:  5'- gCGCCGCCGgGcccgcGCgGCGGUGGCc- -3'
miRNA:   3'- gGCGGUGGCgCuu---CGgCGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 77497 0.68 0.860392
Target:  5'- gCGCCGCCgggGCGAGGCguaccUGCGAgugAGCg- -3'
miRNA:   3'- gGCGGUGG---CGCUUCG-----GCGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 87136 0.68 0.860392
Target:  5'- gCGCCACUGCGucGGCCcucagggagaGCGu--GCUGa -3'
miRNA:   3'- gGCGGUGGCGCu-UCGG----------CGCuauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 96489 0.68 0.860392
Target:  5'- gUCGCgGCCGCGAcccaGGCgGCGA--ACg- -3'
miRNA:   3'- -GGCGgUGGCGCU----UCGgCGCUauUGac -5'
5557 5' -55.8 NC_001806.1 + 30219 0.68 0.860392
Target:  5'- gCGCCcCCGCGcGGCCGUGGc----- -3'
miRNA:   3'- gGCGGuGGCGCuUCGGCGCUauugac -5'
5557 5' -55.8 NC_001806.1 + 21497 0.68 0.855798
Target:  5'- gCCGCCggcgaccgggccccgGCC-CGggGCCGCGA--ACg- -3'
miRNA:   3'- -GGCGG---------------UGGcGCuuCGGCGCUauUGac -5'
5557 5' -55.8 NC_001806.1 + 21597 0.68 0.852696
Target:  5'- cCCaGCCGCCGCGGAGaCGUcgucacggccGGUGGCg- -3'
miRNA:   3'- -GG-CGGUGGCGCUUCgGCG----------CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 1473 0.68 0.852696
Target:  5'- gUCGUCGCCGCGcAGCaccaGCGGgggGGCg- -3'
miRNA:   3'- -GGCGGUGGCGCuUCGg---CGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 105045 0.68 0.852696
Target:  5'- aUGCUgGCCGCGAuucGCCGCGuuuaugGGCUGc -3'
miRNA:   3'- gGCGG-UGGCGCUu--CGGCGCua----UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 100648 0.68 0.844804
Target:  5'- gCCGCCGCCGCucGGCCaccaggcuccaGCGGUcccgcAGCa- -3'
miRNA:   3'- -GGCGGUGGCGcuUCGG-----------CGCUA-----UUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.