miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 42632 0.71 0.696024
Target:  5'- gCGCCGCgGCGgcGUCGCGuccggugcgggGGCUGg -3'
miRNA:   3'- gGCGGUGgCGCuuCGGCGCua---------UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 38059 0.71 0.698023
Target:  5'- aCGcCCACgGCGuccGCCGCGGgcaGGCUGg -3'
miRNA:   3'- gGC-GGUGgCGCuu-CGGCGCUa--UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 9851 0.71 0.704007
Target:  5'- uCCaCCACCGCGuuccgguacugcGCCGCGGU-GCUGa -3'
miRNA:   3'- -GGcGGUGGCGCuu----------CGGCGCUAuUGAC- -5'
5557 5' -55.8 NC_001806.1 + 102439 0.71 0.704007
Target:  5'- cCCGCCgGCCGCGAacugcgucuuggggAGCuugucguCGCGGUAGCg- -3'
miRNA:   3'- -GGCGG-UGGCGCU--------------UCG-------GCGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 56833 0.7 0.716896
Target:  5'- cCCGCCaacaccGCCGCGGccagggcGGCCGCGGcgGGCc- -3'
miRNA:   3'- -GGCGG------UGGCGCU-------UCGGCGCUa-UUGac -5'
5557 5' -55.8 NC_001806.1 + 30784 0.7 0.717883
Target:  5'- uCCGCCuCCucggGCGggGCCGuCGGUGccCUGg -3'
miRNA:   3'- -GGCGGuGG----CGCuuCGGC-GCUAUu-GAC- -5'
5557 5' -55.8 NC_001806.1 + 58157 0.7 0.717883
Target:  5'- aCCGCCgauACCGCGuugggaccGGUgGCGGUGACg- -3'
miRNA:   3'- -GGCGG---UGGCGCu-------UCGgCGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 43285 0.7 0.717883
Target:  5'- uCCGCC-CUcggagGCGGAGCCGCGGcuGCa- -3'
miRNA:   3'- -GGCGGuGG-----CGCUUCGGCGCUauUGac -5'
5557 5' -55.8 NC_001806.1 + 150673 0.7 0.727709
Target:  5'- gCC-CCGCCGCGcuggcGGCCGcCGAUGGCc- -3'
miRNA:   3'- -GGcGGUGGCGCu----UCGGC-GCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 23742 0.7 0.747107
Target:  5'- gCCGCCcagGCCGCGugcGGCgGCGGcGACg- -3'
miRNA:   3'- -GGCGG---UGGCGCu--UCGgCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 104000 0.7 0.747107
Target:  5'- uUGUCACC-CGGAGgCGCGAggGACUGc -3'
miRNA:   3'- gGCGGUGGcGCUUCgGCGCUa-UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 75623 0.7 0.747107
Target:  5'- gCGCCA-CGCGAcGCCGCGccGACg- -3'
miRNA:   3'- gGCGGUgGCGCUuCGGCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 79102 0.7 0.747107
Target:  5'- gCGCCACCGaCGAGGaccccuuccUCGCGcgAGCUa -3'
miRNA:   3'- gGCGGUGGC-GCUUC---------GGCGCuaUUGAc -5'
5557 5' -55.8 NC_001806.1 + 26778 0.7 0.766108
Target:  5'- uCCGCCugCGCGucaCCGCGG-AGCa- -3'
miRNA:   3'- -GGCGGugGCGCuucGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 26391 0.69 0.772651
Target:  5'- gCCGCCAUCGCGGcccccgccgcccccGGCCGCccgGGCc- -3'
miRNA:   3'- -GGCGGUGGCGCU--------------UCGGCGcuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 23078 0.69 0.775437
Target:  5'- -gGCCGCCGUGcgcGCCGUGAgc-CUGg -3'
miRNA:   3'- ggCGGUGGCGCuu-CGGCGCUauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 23030 0.69 0.78464
Target:  5'- gCGCCugCGCGggGaCCuGCGcGUGGCc- -3'
miRNA:   3'- gGCGGugGCGCuuC-GG-CGC-UAUUGac -5'
5557 5' -55.8 NC_001806.1 + 72597 0.69 0.78464
Target:  5'- gCCGCCACCGaccCGGGcccGUCGCGAcGACa- -3'
miRNA:   3'- -GGCGGUGGC---GCUU---CGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 4631 0.69 0.792806
Target:  5'- gCCGCCACCGgccgugaCGAcgucuCCGCGGcGGCUGg -3'
miRNA:   3'- -GGCGGUGGC-------GCUuc---GGCGCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 147377 0.69 0.793707
Target:  5'- cCUGCCGgCGCGAGGgggggaCGCGugGACUGg -3'
miRNA:   3'- -GGCGGUgGCGCUUCg-----GCGCuaUUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.