miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 119690 0.77 0.381917
Target:  5'- cCUGgUACCGCaAAGCCGCGGUcGCUGg -3'
miRNA:   3'- -GGCgGUGGCGcUUCGGCGCUAuUGAC- -5'
5557 5' -55.8 NC_001806.1 + 126111 0.77 0.37376
Target:  5'- uUCGCUACUGCGuGGGCCGCGcgGACg- -3'
miRNA:   3'- -GGCGGUGGCGC-UUCGGCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 76287 0.8 0.25916
Target:  5'- gCCGCCGCCGCGGAGgagauauCCGCGGUGcGCa- -3'
miRNA:   3'- -GGCGGUGGCGCUUC-------GGCGCUAU-UGac -5'
5557 5' -55.8 NC_001806.1 + 107035 0.81 0.224967
Target:  5'- -gGCCGcCCGCGggGCCGCGG--GCUGu -3'
miRNA:   3'- ggCGGU-GGCGCuuCGGCGCUauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 22972 0.82 0.204023
Target:  5'- cCCGCCugCGCGcguGGCUGCGcgAGCUGc -3'
miRNA:   3'- -GGCGGugGCGCu--UCGGCGCuaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 119190 0.75 0.45127
Target:  5'- gCGCCGCCGCcccgccGGCCGCGAaggaGGCUGc -3'
miRNA:   3'- gGCGGUGGCGcu----UCGGCGCUa---UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 76547 0.74 0.526974
Target:  5'- -gGUCACgGCGggGCUGCGGgagguGCUGg -3'
miRNA:   3'- ggCGGUGgCGCuuCGGCGCUau---UGAC- -5'
5557 5' -55.8 NC_001806.1 + 51811 0.72 0.627246
Target:  5'- gCCGCCACCGUGGccGGCCuGCGc-GACg- -3'
miRNA:   3'- -GGCGGUGGCGCU--UCGG-CGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 2501 0.72 0.627246
Target:  5'- gCCGCCGCaCGCGGccugGGCgGCGggGGCg- -3'
miRNA:   3'- -GGCGGUG-GCGCU----UCGgCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 125854 0.72 0.606937
Target:  5'- cCCgGCCGCCGCGGAcGCCGUGGc----- -3'
miRNA:   3'- -GG-CGGUGGCGCUU-CGGCGCUauugac -5'
5557 5' -55.8 NC_001806.1 + 97812 0.73 0.596806
Target:  5'- cCCGCCGCC-CGggGCCaGCGccAACg- -3'
miRNA:   3'- -GGCGGUGGcGCuuCGG-CGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 23154 0.73 0.596806
Target:  5'- uCCGCgGCCGcCGccGCCGCGGaccuGCUGu -3'
miRNA:   3'- -GGCGgUGGC-GCuuCGGCGCUau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 151715 0.73 0.596806
Target:  5'- gCCGCCACCGCuuuaaaGGGCCGCGcgcGACc- -3'
miRNA:   3'- -GGCGGUGGCGc-----UUCGGCGCua-UUGac -5'
5557 5' -55.8 NC_001806.1 + 5 0.73 0.596806
Target:  5'- gCCGCCACCGCuuuaaaGGGCCGCGcgcGACc- -3'
miRNA:   3'- -GGCGGUGGCGc-----UUCGGCGCua-UUGac -5'
5557 5' -55.8 NC_001806.1 + 50878 0.73 0.59074
Target:  5'- cCCGCCAaguucugggcggacuCCGCGcGGCCGCGG-AGCa- -3'
miRNA:   3'- -GGCGGU---------------GGCGCuUCGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 2664 0.73 0.576629
Target:  5'- gCgGCgGCCGCGGGcGCCGCcguGUGGCUGg -3'
miRNA:   3'- -GgCGgUGGCGCUU-CGGCGc--UAUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 112333 0.73 0.566596
Target:  5'- -gGCCACCGCcggGAGGCCGuCGAggcCUGg -3'
miRNA:   3'- ggCGGUGGCG---CUUCGGC-GCUauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 95038 0.73 0.566596
Target:  5'- -aGaCCGCCGCGGuGGCCGUGG-AACUGg -3'
miRNA:   3'- ggC-GGUGGCGCU-UCGGCGCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 114071 0.74 0.526974
Target:  5'- cCCGCCuucUCGCGggGCCGCu---GCUGc -3'
miRNA:   3'- -GGCGGu--GGCGCuuCGGCGcuauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 86667 0.74 0.526974
Target:  5'- cCCgGCgGCCGUGAGGCCGCGGcacAGCa- -3'
miRNA:   3'- -GG-CGgUGGCGCUUCGGCGCUa--UUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.