miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 29802 0.68 0.836721
Target:  5'- gCGCCGCCGCGccccCCGUGAcgGGCg- -3'
miRNA:   3'- gGCGGUGGCGCuuc-GGCGCUa-UUGac -5'
5557 5' -55.8 NC_001806.1 + 29948 0.76 0.398584
Target:  5'- cCCGCCagucgcgaGCCGCGgcGCCGCGGggGGCg- -3'
miRNA:   3'- -GGCGG--------UGGCGCuuCGGCGCUa-UUGac -5'
5557 5' -55.8 NC_001806.1 + 30190 0.66 0.919922
Target:  5'- cCCGCguCCGCG--GCCGCGucggGACc- -3'
miRNA:   3'- -GGCGguGGCGCuuCGGCGCua--UUGac -5'
5557 5' -55.8 NC_001806.1 + 30219 0.68 0.860392
Target:  5'- gCGCCcCCGCGcGGCCGUGGc----- -3'
miRNA:   3'- gGCGGuGGCGCuUCGGCGCUauugac -5'
5557 5' -55.8 NC_001806.1 + 30308 0.67 0.902111
Target:  5'- cCCGCC-CCGCGGAcgcgcGCCGUGu--GCc- -3'
miRNA:   3'- -GGCGGuGGCGCUU-----CGGCGCuauUGac -5'
5557 5' -55.8 NC_001806.1 + 30745 0.68 0.820012
Target:  5'- gCCGCCucuuccGCCGcCGggGCCGCGu------ -3'
miRNA:   3'- -GGCGG------UGGC-GCuuCGGCGCuauugac -5'
5557 5' -55.8 NC_001806.1 + 30784 0.7 0.717883
Target:  5'- uCCGCCuCCucggGCGggGCCGuCGGUGccCUGg -3'
miRNA:   3'- -GGCGGuGG----CGCuuCGGC-GCUAUu-GAC- -5'
5557 5' -55.8 NC_001806.1 + 30842 0.66 0.930623
Target:  5'- uCgGCCcCCGCGcugcuucuGGGCCGCGggGGCc- -3'
miRNA:   3'- -GgCGGuGGCGC--------UUCGGCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 31095 0.69 0.811401
Target:  5'- aCC-CgGCUGCG-GGCCGCGGUccccGGCUGg -3'
miRNA:   3'- -GGcGgUGGCGCuUCGGCGCUA----UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 33002 0.69 0.80263
Target:  5'- gCCGCCACgGgGGccGGCCguugGCGGUAACc- -3'
miRNA:   3'- -GGCGGUGgCgCU--UCGG----CGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 33741 0.66 0.930623
Target:  5'- gCGCCGgcuCUGCGGugucggcggcGGCUGCGGcGGCUGc -3'
miRNA:   3'- gGCGGU---GGCGCU----------UCGGCGCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 34542 0.67 0.874448
Target:  5'- gCCGCUcguaagaGCCGCGAcccGGCCGcCGGggAGCg- -3'
miRNA:   3'- -GGCGG-------UGGCGCU---UCGGC-GCUa-UUGac -5'
5557 5' -55.8 NC_001806.1 + 37238 0.71 0.674918
Target:  5'- aCGCCGCCGCGAacacaguucguccaGGCCGCa------- -3'
miRNA:   3'- gGCGGUGGCGCU--------------UCGGCGcuauugac -5'
5557 5' -55.8 NC_001806.1 + 38059 0.71 0.698023
Target:  5'- aCGcCCACgGCGuccGCCGCGGgcaGGCUGg -3'
miRNA:   3'- gGC-GGUGgCGCuu-CGGCGCUa--UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 38802 0.67 0.889085
Target:  5'- uCCGCUuCCGCGggGaCCcggGCGGggguggauacgcUGGCUGg -3'
miRNA:   3'- -GGCGGuGGCGCuuC-GG---CGCU------------AUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 41588 0.66 0.916528
Target:  5'- aCCGCCgcauuacggauaagcGCCGCGAucGCCGgGG-GugUGg -3'
miRNA:   3'- -GGCGG---------------UGGCGCUu-CGGCgCUaUugAC- -5'
5557 5' -55.8 NC_001806.1 + 42231 0.76 0.433278
Target:  5'- cCCgGCCGCCGCGGccCCGCGGgcguACUGg -3'
miRNA:   3'- -GG-CGGUGGCGCUucGGCGCUau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 42632 0.71 0.696024
Target:  5'- gCGCCGCgGCGgcGUCGCGuccggugcgggGGCUGg -3'
miRNA:   3'- gGCGGUGgCGCuuCGGCGCua---------UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 43285 0.7 0.717883
Target:  5'- uCCGCC-CUcggagGCGGAGCCGCGGcuGCa- -3'
miRNA:   3'- -GGCGGuGG-----CGCUUCGGCGCUauUGac -5'
5557 5' -55.8 NC_001806.1 + 45106 0.68 0.836721
Target:  5'- uCCGCCcCCGCGAguagcgacGGCCGUGu--GCc- -3'
miRNA:   3'- -GGCGGuGGCGCU--------UCGGCGCuauUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.