miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 21597 0.68 0.852696
Target:  5'- cCCaGCCGCCGCGGAGaCGUcgucacggccGGUGGCg- -3'
miRNA:   3'- -GG-CGGUGGCGCUUCgGCG----------CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 21910 0.68 0.860392
Target:  5'- gCGCCGCCGgGcccgcGCgGCGGUGGCc- -3'
miRNA:   3'- gGCGGUGGCgCuu---CGgCGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 22412 0.72 0.64757
Target:  5'- aCGCCAUgGCGGccGGCCGCuucGGCUGg -3'
miRNA:   3'- gGCGGUGgCGCU--UCGGCGcuaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 22456 0.68 0.836721
Target:  5'- gCgGCCGCCGUGGccaugAGCCGcCGAUAc--- -3'
miRNA:   3'- -GgCGGUGGCGCU-----UCGGC-GCUAUugac -5'
5557 5' -55.8 NC_001806.1 + 22624 0.71 0.688007
Target:  5'- gCCGCCGCCGCaccgggcGAGCgCGCGGUGc--- -3'
miRNA:   3'- -GGCGGUGGCGc------UUCG-GCGCUAUugac -5'
5557 5' -55.8 NC_001806.1 + 22748 0.66 0.930623
Target:  5'- cCCGCCACgC-CGAcGCCGaCGAcGACg- -3'
miRNA:   3'- -GGCGGUG-GcGCUuCGGC-GCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 22784 0.67 0.867144
Target:  5'- gCGCCcaggccgGCCGCGuGGCCGuCGAgugcCUGg -3'
miRNA:   3'- gGCGG-------UGGCGCuUCGGC-GCUauu-GAC- -5'
5557 5' -55.8 NC_001806.1 + 22972 0.82 0.204023
Target:  5'- cCCGCCugCGCGcguGGCUGCGcgAGCUGc -3'
miRNA:   3'- -GGCGGugGCGCu--UCGGCGCuaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 23030 0.69 0.78464
Target:  5'- gCGCCugCGCGggGaCCuGCGcGUGGCc- -3'
miRNA:   3'- gGCGGugGCGCuuC-GG-CGC-UAUUGac -5'
5557 5' -55.8 NC_001806.1 + 23078 0.69 0.775437
Target:  5'- -gGCCGCCGUGcgcGCCGUGAgc-CUGg -3'
miRNA:   3'- ggCGGUGGCGCuu-CGGCGCUauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 23154 0.73 0.596806
Target:  5'- uCCGCgGCCGcCGccGCCGCGGaccuGCUGu -3'
miRNA:   3'- -GGCGgUGGC-GCuuCGGCGCUau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 23256 0.72 0.627246
Target:  5'- gCCGCCGCCGCcuccgccgcGCCGCGGgaggGGCg- -3'
miRNA:   3'- -GGCGGUGGCGcuu------CGGCGCUa---UUGac -5'
5557 5' -55.8 NC_001806.1 + 23742 0.7 0.747107
Target:  5'- gCCGCCcagGCCGCGugcGGCgGCGGcGACg- -3'
miRNA:   3'- -GGCGG---UGGCGCu--UCGgCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 24221 0.69 0.80263
Target:  5'- cCCGCCGacgggcCCGCGguGUCGCGGcAGCa- -3'
miRNA:   3'- -GGCGGU------GGCGCuuCGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 24412 0.77 0.390192
Target:  5'- gCCGCCGCUGCGccuguGCCGCGGcGGCa- -3'
miRNA:   3'- -GGCGGUGGCGCuu---CGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 24808 0.68 0.844804
Target:  5'- cCUGCCGCCgGCGccGCCcGgGAUucGCUGg -3'
miRNA:   3'- -GGCGGUGG-CGCuuCGG-CgCUAu-UGAC- -5'
5557 5' -55.8 NC_001806.1 + 25931 0.66 0.919922
Target:  5'- gCGCgCGCgGCGGgcgugggggcggGGCCGCGggAGCg- -3'
miRNA:   3'- gGCG-GUGgCGCU------------UCGGCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 26391 0.69 0.772651
Target:  5'- gCCGCCAUCGCGGcccccgccgcccccGGCCGCccgGGCc- -3'
miRNA:   3'- -GGCGGUGGCGCU--------------UCGGCGcuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 26778 0.7 0.766108
Target:  5'- uCCGCCugCGCGucaCCGCGG-AGCa- -3'
miRNA:   3'- -GGCGGugGCGCuucGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 26963 0.67 0.895712
Target:  5'- cCCGCCuggcgcGCCGCGGcucgugGGcCCGCGAgcgGGCc- -3'
miRNA:   3'- -GGCGG------UGGCGCU------UC-GGCGCUa--UUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.