miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 117800 0.76 0.398584
Target:  5'- aCCGCCACC-CGGAcGCCGCGA-AACg- -3'
miRNA:   3'- -GGCGGUGGcGCUU-CGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 116683 0.69 0.811401
Target:  5'- cCCGUaaaCGCcGAGCUGCGAUcGCUGg -3'
miRNA:   3'- -GGCGgugGCGcUUCGGCGCUAuUGAC- -5'
5557 5' -55.8 NC_001806.1 + 114071 0.74 0.526974
Target:  5'- cCCGCCuucUCGCGggGCCGCu---GCUGc -3'
miRNA:   3'- -GGCGGu--GGCGCuuCGGCGcuauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 113983 0.72 0.63741
Target:  5'- -gGCCcgaGCCGCGGAcGCCGCgGAUGACc- -3'
miRNA:   3'- ggCGG---UGGCGCUU-CGGCG-CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 113865 0.75 0.442222
Target:  5'- aCCGCCAUCGCGAcuGCCGgGuUAGCg- -3'
miRNA:   3'- -GGCGGUGGCGCUu-CGGCgCuAUUGac -5'
5557 5' -55.8 NC_001806.1 + 112333 0.73 0.566596
Target:  5'- -gGCCACCGCcggGAGGCCGuCGAggcCUGg -3'
miRNA:   3'- ggCGGUGGCG---CUUCGGC-GCUauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 107035 0.81 0.224967
Target:  5'- -gGCCGcCCGCGggGCCGCGG--GCUGu -3'
miRNA:   3'- ggCGGU-GGCGCuuCGGCGCUauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 106323 0.67 0.902111
Target:  5'- -aGCCACC-CGAgcgGGCCGCG-UGAUa- -3'
miRNA:   3'- ggCGGUGGcGCU---UCGGCGCuAUUGac -5'
5557 5' -55.8 NC_001806.1 + 106221 0.67 0.895059
Target:  5'- gCCGCCuCCGUGuuGCUGCGuucccgggccuggGUAACg- -3'
miRNA:   3'- -GGCGGuGGCGCuuCGGCGC-------------UAUUGac -5'
5557 5' -55.8 NC_001806.1 + 105045 0.68 0.852696
Target:  5'- aUGCUgGCCGCGAuucGCCGCGuuuaugGGCUGc -3'
miRNA:   3'- gGCGG-UGGCGCUu--CGGCGCua----UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 104000 0.7 0.747107
Target:  5'- uUGUCACC-CGGAGgCGCGAggGACUGc -3'
miRNA:   3'- gGCGGUGGcGCUUCgGCGCUa-UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 103808 0.72 0.657718
Target:  5'- gCGCCGCCGCGgcGgCGaCGGgcucGCUGg -3'
miRNA:   3'- gGCGGUGGCGCuuCgGC-GCUau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 102511 0.67 0.895712
Target:  5'- cCCGaUCACCGCGGccaGGCaCGCcaGGUAGCg- -3'
miRNA:   3'- -GGC-GGUGGCGCU---UCG-GCG--CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 102439 0.71 0.704007
Target:  5'- cCCGCCgGCCGCGAacugcgucuuggggAGCuugucguCGCGGUAGCg- -3'
miRNA:   3'- -GGCGG-UGGCGCU--------------UCG-------GCGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 102158 0.67 0.889085
Target:  5'- aCGUUGCCGUucgcgaGGAGCCGCugGAUAACg- -3'
miRNA:   3'- gGCGGUGGCG------CUUCGGCG--CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 101856 0.66 0.919922
Target:  5'- gCGCCGCCugGCG-GGCCccCGAUGACa- -3'
miRNA:   3'- gGCGGUGG--CGCuUCGGc-GCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 101473 0.67 0.867884
Target:  5'- aCGCCaACCGCcGGGCCGgGA---CUGg -3'
miRNA:   3'- gGCGG-UGGCGcUUCGGCgCUauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 100648 0.68 0.844804
Target:  5'- gCCGCCGCCGCucGGCCaccaggcuccaGCGGUcccgcAGCa- -3'
miRNA:   3'- -GGCGGUGGCGcuUCGG-----------CGCUA-----UUGac -5'
5557 5' -55.8 NC_001806.1 + 98023 0.68 0.836721
Target:  5'- uCgGCCACCGUG-GGCCgGCGGgugAGCg- -3'
miRNA:   3'- -GgCGGUGGCGCuUCGG-CGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 97940 0.66 0.925391
Target:  5'- uUGCCAUCGCGuggugcGAGCUGCaGAaucacgAGCUGa -3'
miRNA:   3'- gGCGGUGGCGC------UUCGGCG-CUa-----UUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.