Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5557 | 5' | -55.8 | NC_001806.1 | + | 75231 | 0.66 | 0.908281 |
Target: 5'- -gGCgCACCGCGuccuGGUcgaCGCGGUGACg- -3' miRNA: 3'- ggCG-GUGGCGCu---UCG---GCGCUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 76884 | 0.66 | 0.914219 |
Target: 5'- cCCGUCGCCGCGucgAGGCCcuGCGGa----- -3' miRNA: 3'- -GGCGGUGGCGC---UUCGG--CGCUauugac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 30842 | 0.66 | 0.930623 |
Target: 5'- uCgGCCcCCGCGcugcuucuGGGCCGCGggGGCc- -3' miRNA: 3'- -GgCGGuGGCGC--------UUCGGCGCuaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 13586 | 0.66 | 0.908281 |
Target: 5'- aCCGUgAUCGgGAGGCUGgGG-GGCUGg -3' miRNA: 3'- -GGCGgUGGCgCUUCGGCgCUaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 66846 | 0.67 | 0.889085 |
Target: 5'- gCGCCGCCuccUGggGCCcgggcacacgGCGGUGACg- -3' miRNA: 3'- gGCGGUGGc--GCuuCGG----------CGCUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 71951 | 0.67 | 0.882236 |
Target: 5'- gCGCgACCGCGGGcccugggccGCCGCGcAUGugUu -3' miRNA: 3'- gGCGgUGGCGCUU---------CGGCGC-UAUugAc -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 92900 | 0.67 | 0.902111 |
Target: 5'- gCUGCgGCCGCGuGGuCCGCGcagGGCg- -3' miRNA: 3'- -GGCGgUGGCGCuUC-GGCGCua-UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 30308 | 0.67 | 0.902111 |
Target: 5'- cCCGCC-CCGCGGAcgcgcGCCGUGu--GCc- -3' miRNA: 3'- -GGCGGuGGCGCUU-----CGGCGCuauUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 4283 | 0.67 | 0.882236 |
Target: 5'- cCCGCCggggcugcccgGCCGUGAAGCgGCccGUGGCg- -3' miRNA: 3'- -GGCGG-----------UGGCGCUUCGgCGc-UAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 72820 | 0.67 | 0.889085 |
Target: 5'- aCCcCCGCCGCaGAggcGGCCGaagaaGAUGACg- -3' miRNA: 3'- -GGcGGUGGCG-CU---UCGGCg----CUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 16495 | 0.67 | 0.882236 |
Target: 5'- uUGCCGCCGCGGcugauggcucgAGCCGCcucc-CUGu -3' miRNA: 3'- gGCGGUGGCGCU-----------UCGGCGcuauuGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 50004 | 0.67 | 0.875167 |
Target: 5'- gCGCCuucaCGCGGAGgCGCGcgGGuCUGa -3' miRNA: 3'- gGCGGug--GCGCUUCgGCGCuaUU-GAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 106323 | 0.67 | 0.902111 |
Target: 5'- -aGCCACC-CGAgcgGGCCGCG-UGAUa- -3' miRNA: 3'- ggCGGUGGcGCU---UCGGCGCuAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 50088 | 0.67 | 0.882236 |
Target: 5'- gCGUC-CCGuCGggGCCGCGGccgugccguuACUGa -3' miRNA: 3'- gGCGGuGGC-GCuuCGGCGCUau--------UGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 91697 | 0.67 | 0.882236 |
Target: 5'- gCGCCGcCCGCGGAGCCaucgGCGucuucggGACc- -3' miRNA: 3'- gGCGGU-GGCGCUUCGG----CGCua-----UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 75985 | 0.67 | 0.902111 |
Target: 5'- gCGCgGCCuuCGggGCCGCGGccGACa- -3' miRNA: 3'- gGCGgUGGc-GCuuCGGCGCUa-UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 38802 | 0.67 | 0.889085 |
Target: 5'- uCCGCUuCCGCGggGaCCcggGCGGggguggauacgcUGGCUGg -3' miRNA: 3'- -GGCGGuGGCGCuuC-GG---CGCU------------AUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 143125 | 0.67 | 0.889085 |
Target: 5'- -gGCUGCCGgGAggGGCCGCGGaugGGCg- -3' miRNA: 3'- ggCGGUGGCgCU--UCGGCGCUa--UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 55772 | 0.67 | 0.889085 |
Target: 5'- uUCGUCACCGCuc--CCGCGGUGAUcgUGg -3' miRNA: 3'- -GGCGGUGGCGcuucGGCGCUAUUG--AC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 22784 | 0.67 | 0.867144 |
Target: 5'- gCGCCcaggccgGCCGCGuGGCCGuCGAgugcCUGg -3' miRNA: 3'- gGCGG-------UGGCGCuUCGGC-GCUauu-GAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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