miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 2664 0.73 0.576629
Target:  5'- gCgGCgGCCGCGGGcGCCGCcguGUGGCUGg -3'
miRNA:   3'- -GgCGgUGGCGCUU-CGGCGc--UAUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 50878 0.73 0.59074
Target:  5'- cCCGCCAaguucugggcggacuCCGCGcGGCCGCGG-AGCa- -3'
miRNA:   3'- -GGCGGU---------------GGCGCuUCGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 5 0.73 0.596806
Target:  5'- gCCGCCACCGCuuuaaaGGGCCGCGcgcGACc- -3'
miRNA:   3'- -GGCGGUGGCGc-----UUCGGCGCua-UUGac -5'
5557 5' -55.8 NC_001806.1 + 151715 0.73 0.596806
Target:  5'- gCCGCCACCGCuuuaaaGGGCCGCGcgcGACc- -3'
miRNA:   3'- -GGCGGUGGCGc-----UUCGGCGCua-UUGac -5'
5557 5' -55.8 NC_001806.1 + 23154 0.73 0.596806
Target:  5'- uCCGCgGCCGcCGccGCCGCGGaccuGCUGu -3'
miRNA:   3'- -GGCGgUGGC-GCuuCGGCGCUau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 97812 0.73 0.596806
Target:  5'- cCCGCCGCC-CGggGCCaGCGccAACg- -3'
miRNA:   3'- -GGCGGUGGcGCuuCGG-CGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 125854 0.72 0.606937
Target:  5'- cCCgGCCGCCGCGGAcGCCGUGGc----- -3'
miRNA:   3'- -GG-CGGUGGCGCUU-CGGCGCUauugac -5'
5557 5' -55.8 NC_001806.1 + 2501 0.72 0.627246
Target:  5'- gCCGCCGCaCGCGGccugGGCgGCGggGGCg- -3'
miRNA:   3'- -GGCGGUG-GCGCU----UCGgCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 51811 0.72 0.627246
Target:  5'- gCCGCCACCGUGGccGGCCuGCGc-GACg- -3'
miRNA:   3'- -GGCGGUGGCGCU--UCGG-CGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 23256 0.72 0.627246
Target:  5'- gCCGCCGCCGCcuccgccgcGCCGCGGgaggGGCg- -3'
miRNA:   3'- -GGCGGUGGCGcuu------CGGCGCUa---UUGac -5'
5557 5' -55.8 NC_001806.1 + 113983 0.72 0.63741
Target:  5'- -gGCCcgaGCCGCGGAcGCCGCgGAUGACc- -3'
miRNA:   3'- ggCGG---UGGCGCUU-CGGCG-CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 90856 0.72 0.64757
Target:  5'- cCCGCCGCCGUGGcaCUGCGAUGcCg- -3'
miRNA:   3'- -GGCGGUGGCGCUucGGCGCUAUuGac -5'
5557 5' -55.8 NC_001806.1 + 22412 0.72 0.64757
Target:  5'- aCGCCAUgGCGGccGGCCGCuucGGCUGg -3'
miRNA:   3'- gGCGGUGgCGCU--UCGGCGcuaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 103808 0.72 0.657718
Target:  5'- gCGCCGCCGCGgcGgCGaCGGgcucGCUGg -3'
miRNA:   3'- gGCGGUGGCGCuuCgGC-GCUau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 37238 0.71 0.674918
Target:  5'- aCGCCGCCGCGAacacaguucguccaGGCCGCa------- -3'
miRNA:   3'- gGCGGUGGCGCU--------------UCGGCGcuauugac -5'
5557 5' -55.8 NC_001806.1 + 131882 0.71 0.676936
Target:  5'- gCCGCCcgcGCCGCGAcgacgccGGCCGCcuccccGCUGg -3'
miRNA:   3'- -GGCGG---UGGCGCU-------UCGGCGcuau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 151553 0.71 0.677944
Target:  5'- gCgGCCggggGCgGCgGggGCCGCGAUGGCg- -3'
miRNA:   3'- -GgCGG----UGgCG-CuuCGGCGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 3089 0.71 0.677944
Target:  5'- uCCGCgGCgGCGGcGGCCGCGG-AGCUc -3'
miRNA:   3'- -GGCGgUGgCGCU-UCGGCGCUaUUGAc -5'
5557 5' -55.8 NC_001806.1 + 22624 0.71 0.688007
Target:  5'- gCCGCCGCCGCaccgggcGAGCgCGCGGUGc--- -3'
miRNA:   3'- -GGCGGUGGCGc------UUCG-GCGCUAUugac -5'
5557 5' -55.8 NC_001806.1 + 2782 0.71 0.688007
Target:  5'- gCGCCGCgGCGGcccggggcGCCGCGG--GCUGg -3'
miRNA:   3'- gGCGGUGgCGCUu-------CGGCGCUauUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.