Results 41 - 60 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5557 | 5' | -55.8 | NC_001806.1 | + | 75985 | 0.67 | 0.902111 |
Target: 5'- gCGCgGCCuuCGggGCCGCGGccGACa- -3' miRNA: 3'- gGCGgUGGc-GCuuCGGCGCUa-UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 106323 | 0.67 | 0.902111 |
Target: 5'- -aGCCACC-CGAgcgGGCCGCG-UGAUa- -3' miRNA: 3'- ggCGGUGGcGCU---UCGGCGCuAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 92900 | 0.67 | 0.902111 |
Target: 5'- gCUGCgGCCGCGuGGuCCGCGcagGGCg- -3' miRNA: 3'- -GGCGgUGGCGCuUC-GGCGCua-UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 30308 | 0.67 | 0.902111 |
Target: 5'- cCCGCC-CCGCGGAcgcgcGCCGUGu--GCc- -3' miRNA: 3'- -GGCGGuGGCGCUU-----CGGCGCuauUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 5948 | 0.67 | 0.902111 |
Target: 5'- aCCGCC-CCaaggggGCGggGCCGCcgGGUAAa-- -3' miRNA: 3'- -GGCGGuGG------CGCuuCGGCG--CUAUUgac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 102511 | 0.67 | 0.895712 |
Target: 5'- cCCGaUCACCGCGGccaGGCaCGCcaGGUAGCg- -3' miRNA: 3'- -GGC-GGUGGCGCU---UCG-GCG--CUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 26963 | 0.67 | 0.895712 |
Target: 5'- cCCGCCuggcgcGCCGCGGcucgugGGcCCGCGAgcgGGCc- -3' miRNA: 3'- -GGCGG------UGGCGCU------UC-GGCGCUa--UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 148068 | 0.67 | 0.904607 |
Target: 5'- aCUGCUGCCGUGuGGCC-CGAUGggcgccgaggggggcGCUGu -3' miRNA: 3'- -GGCGGUGGCGCuUCGGcGCUAU---------------UGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 22784 | 0.67 | 0.867144 |
Target: 5'- gCGCCcaggccgGCCGCGuGGCCGuCGAgugcCUGg -3' miRNA: 3'- gGCGG-------UGGCGCuUCGGC-GCUauu-GAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 101473 | 0.67 | 0.867884 |
Target: 5'- aCGCCaACCGCcGGGCCGgGA---CUGg -3' miRNA: 3'- gGCGG-UGGCGcUUCGGCgCUauuGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 1384 | 0.68 | 0.844804 |
Target: 5'- cCCGCCGCCGCc-AGCa-CGGUGccGCUGc -3' miRNA: 3'- -GGCGGUGGCGcuUCGgcGCUAU--UGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 21597 | 0.68 | 0.852696 |
Target: 5'- cCCaGCCGCCGCGGAGaCGUcgucacggccGGUGGCg- -3' miRNA: 3'- -GG-CGGUGGCGCUUCgGCG----------CUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 77497 | 0.68 | 0.860392 |
Target: 5'- gCGCCGCCgggGCGAGGCguaccUGCGAgugAGCg- -3' miRNA: 3'- gGCGGUGG---CGCUUCG-----GCGCUa--UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 21910 | 0.68 | 0.860392 |
Target: 5'- gCGCCGCCGgGcccgcGCgGCGGUGGCc- -3' miRNA: 3'- gGCGGUGGCgCuu---CGgCGCUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 122872 | 0.68 | 0.819159 |
Target: 5'- -aGCCGCCGCGccacggccgagaaGAGCgGCGAguGCUc -3' miRNA: 3'- ggCGGUGGCGC-------------UUCGgCGCUauUGAc -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 30745 | 0.68 | 0.820012 |
Target: 5'- gCCGCCucuuccGCCGcCGggGCCGCGu------ -3' miRNA: 3'- -GGCGG------UGGC-GCuuCGGCGCuauugac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 70401 | 0.68 | 0.820012 |
Target: 5'- aCGCCAUCGUGcuGCUGCGGcuGCa- -3' miRNA: 3'- gGCGGUGGCGCuuCGGCGCUauUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 21497 | 0.68 | 0.855798 |
Target: 5'- gCCGCCggcgaccgggccccgGCC-CGggGCCGCGA--ACg- -3' miRNA: 3'- -GGCGG---------------UGGcGCuuCGGCGCUauUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 96733 | 0.68 | 0.844804 |
Target: 5'- gCGCCACgGUGGugcaguucgagcAGCCGCGcc-GCUGc -3' miRNA: 3'- gGCGGUGgCGCU------------UCGGCGCuauUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 24808 | 0.68 | 0.844804 |
Target: 5'- cCUGCCGCCgGCGccGCCcGgGAUucGCUGg -3' miRNA: 3'- -GGCGGUGG-CGCuuCGG-CgCUAu-UGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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