miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 151715 0.73 0.596806
Target:  5'- gCCGCCACCGCuuuaaaGGGCCGCGcgcGACc- -3'
miRNA:   3'- -GGCGGUGGCGc-----UUCGGCGCua-UUGac -5'
5557 5' -55.8 NC_001806.1 + 151553 0.71 0.677944
Target:  5'- gCgGCCggggGCgGCgGggGCCGCGAUGGCg- -3'
miRNA:   3'- -GgCGG----UGgCG-CuuCGGCGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 150673 0.7 0.727709
Target:  5'- gCC-CCGCCGCGcuggcGGCCGcCGAUGGCc- -3'
miRNA:   3'- -GGcGGUGGCGCu----UCGGC-GCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 148068 0.67 0.904607
Target:  5'- aCUGCUGCCGUGuGGCC-CGAUGggcgccgaggggggcGCUGu -3'
miRNA:   3'- -GGCGGUGGCGCuUCGGcGCUAU---------------UGAC- -5'
5557 5' -55.8 NC_001806.1 + 147992 0.76 0.433278
Target:  5'- aCGCCccCCGCGgcGCCGCGGcucgcGACUGg -3'
miRNA:   3'- gGCGGu-GGCGCuuCGGCGCUa----UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 147377 0.69 0.793707
Target:  5'- cCUGCCGgCGCGAGGgggggaCGCGugGACUGg -3'
miRNA:   3'- -GGCGGUgGCGCUUCg-----GCGCuaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 143125 0.67 0.889085
Target:  5'- -gGCUGCCGgGAggGGCCGCGGaugGGCg- -3'
miRNA:   3'- ggCGGUGGCgCU--UCGGCGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 139087 0.66 0.930623
Target:  5'- aCGUUAUCuucCGggGCUGCGAgauGCUGa -3'
miRNA:   3'- gGCGGUGGc--GCuuCGGCGCUau-UGAC- -5'
5557 5' -55.8 NC_001806.1 + 136320 0.67 0.895712
Target:  5'- uCCGCCACgCGCGuggagucgaAGGCCaGCGccAGCUc -3'
miRNA:   3'- -GGCGGUG-GCGC---------UUCGG-CGCuaUUGAc -5'
5557 5' -55.8 NC_001806.1 + 135132 0.69 0.801745
Target:  5'- gUGCUggacguCCGCGAcgaacagGGCCGCGAUGuCUGu -3'
miRNA:   3'- gGCGGu-----GGCGCU-------UCGGCGCUAUuGAC- -5'
5557 5' -55.8 NC_001806.1 + 134677 1.11 0.002322
Target:  5'- aCCGCCACCGCGAAGCCGCGAUAACUGg -3'
miRNA:   3'- -GGCGGUGGCGCUUCGGCGCUAUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 132662 0.66 0.908281
Target:  5'- gCCGCgGCCGCuuacGCCGCGcuc-CUGg -3'
miRNA:   3'- -GGCGgUGGCGcuu-CGGCGCuauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 131882 0.71 0.676936
Target:  5'- gCCGCCcgcGCCGCGAcgacgccGGCCGCcuccccGCUGg -3'
miRNA:   3'- -GGCGG---UGGCGCU-------UCGGCGcuau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 131813 0.75 0.442222
Target:  5'- uCCGUCACCGCGAcggAGCUGCGGgauuuCUa -3'
miRNA:   3'- -GGCGGUGGCGCU---UCGGCGCUauu--GAc -5'
5557 5' -55.8 NC_001806.1 + 126111 0.77 0.37376
Target:  5'- uUCGCUACUGCGuGGGCCGCGcgGACg- -3'
miRNA:   3'- -GGCGGUGGCGC-UUCGGCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 125854 0.72 0.606937
Target:  5'- cCCgGCCGCCGCGGAcGCCGUGGc----- -3'
miRNA:   3'- -GG-CGGUGGCGCUU-CGGCGCUauugac -5'
5557 5' -55.8 NC_001806.1 + 123823 0.66 0.919922
Target:  5'- cCCGCCACCGaucCGGccuCCGCGAgcgGCUu -3'
miRNA:   3'- -GGCGGUGGC---GCUuc-GGCGCUau-UGAc -5'
5557 5' -55.8 NC_001806.1 + 122872 0.68 0.819159
Target:  5'- -aGCCGCCGCGccacggccgagaaGAGCgGCGAguGCUc -3'
miRNA:   3'- ggCGGUGGCGC-------------UUCGgCGCUauUGAc -5'
5557 5' -55.8 NC_001806.1 + 119690 0.77 0.381917
Target:  5'- cCUGgUACCGCaAAGCCGCGGUcGCUGg -3'
miRNA:   3'- -GGCgGUGGCGcUUCGGCGCUAuUGAC- -5'
5557 5' -55.8 NC_001806.1 + 119190 0.75 0.45127
Target:  5'- gCGCCGCCGCcccgccGGCCGCGAaggaGGCUGc -3'
miRNA:   3'- gGCGGUGGCGcu----UCGGCGCUa---UUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.