miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 5 0.73 0.596806
Target:  5'- gCCGCCACCGCuuuaaaGGGCCGCGcgcGACc- -3'
miRNA:   3'- -GGCGGUGGCGc-----UUCGGCGCua-UUGac -5'
5557 5' -55.8 NC_001806.1 + 1384 0.68 0.844804
Target:  5'- cCCGCCGCCGCc-AGCa-CGGUGccGCUGc -3'
miRNA:   3'- -GGCGGUGGCGcuUCGgcGCUAU--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 1473 0.68 0.852696
Target:  5'- gUCGUCGCCGCGcAGCaccaGCGGgggGGCg- -3'
miRNA:   3'- -GGCGGUGGCGCuUCGg---CGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 1825 0.66 0.914219
Target:  5'- uUGCCGCCGCGGcacaGGCgcaGCGGcGGCg- -3'
miRNA:   3'- gGCGGUGGCGCU----UCGg--CGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 2501 0.72 0.627246
Target:  5'- gCCGCCGCaCGCGGccugGGCgGCGggGGCg- -3'
miRNA:   3'- -GGCGGUG-GCGCU----UCGgCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 2664 0.73 0.576629
Target:  5'- gCgGCgGCCGCGGGcGCCGCcguGUGGCUGg -3'
miRNA:   3'- -GgCGgUGGCGCUU-CGGCGc--UAUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 2782 0.71 0.688007
Target:  5'- gCGCCGCgGCGGcccggggcGCCGCGG--GCUGg -3'
miRNA:   3'- gGCGGUGgCGCUu-------CGGCGCUauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 2930 0.66 0.925391
Target:  5'- gCCGCCGCCuccggGCGGccgGGCCGgGccggGACUc -3'
miRNA:   3'- -GGCGGUGG-----CGCU---UCGGCgCua--UUGAc -5'
5557 5' -55.8 NC_001806.1 + 3008 0.69 0.80263
Target:  5'- gCCGCCAgCGCGucGGCgGCGuccggugcGCUGg -3'
miRNA:   3'- -GGCGGUgGCGCu-UCGgCGCuau-----UGAC- -5'
5557 5' -55.8 NC_001806.1 + 3041 0.66 0.908281
Target:  5'- gCCGCCGCCGCcagcaGggGgCGCaggcuCUGg -3'
miRNA:   3'- -GGCGGUGGCG-----CuuCgGCGcuauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 3089 0.71 0.677944
Target:  5'- uCCGCgGCgGCGGcGGCCGCGG-AGCUc -3'
miRNA:   3'- -GGCGgUGgCGCU-UCGGCGCUaUUGAc -5'
5557 5' -55.8 NC_001806.1 + 4283 0.67 0.882236
Target:  5'- cCCGCCggggcugcccgGCCGUGAAGCgGCccGUGGCg- -3'
miRNA:   3'- -GGCGG-----------UGGCGCUUCGgCGc-UAUUGac -5'
5557 5' -55.8 NC_001806.1 + 4631 0.69 0.792806
Target:  5'- gCCGCCACCGgccgugaCGAcgucuCCGCGGcGGCUGg -3'
miRNA:   3'- -GGCGGUGGC-------GCUuc---GGCGCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 4826 0.69 0.80263
Target:  5'- uCCGggGCgGCGAGGCCGCGGggucgGGCg- -3'
miRNA:   3'- -GGCggUGgCGCUUCGGCGCUa----UUGac -5'
5557 5' -55.8 NC_001806.1 + 5948 0.67 0.902111
Target:  5'- aCCGCC-CCaaggggGCGggGCCGCcgGGUAAa-- -3'
miRNA:   3'- -GGCGGuGG------CGCuuCGGCG--CUAUUgac -5'
5557 5' -55.8 NC_001806.1 + 9851 0.71 0.704007
Target:  5'- uCCaCCACCGCGuuccgguacugcGCCGCGGU-GCUGa -3'
miRNA:   3'- -GGcGGUGGCGCuu----------CGGCGCUAuUGAC- -5'
5557 5' -55.8 NC_001806.1 + 13586 0.66 0.908281
Target:  5'- aCCGUgAUCGgGAGGCUGgGG-GGCUGg -3'
miRNA:   3'- -GGCGgUGGCgCUUCGGCgCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 16495 0.67 0.882236
Target:  5'- uUGCCGCCGCGGcugauggcucgAGCCGCcucc-CUGu -3'
miRNA:   3'- gGCGGUGGCGCU-----------UCGGCGcuauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 21333 0.69 0.80263
Target:  5'- aCGCCggggacGCCGUcucGCCGCGAcAGCUGg -3'
miRNA:   3'- gGCGG------UGGCGcuuCGGCGCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 21497 0.68 0.855798
Target:  5'- gCCGCCggcgaccgggccccgGCC-CGggGCCGCGA--ACg- -3'
miRNA:   3'- -GGCGG---------------UGGcGCuuCGGCGCUauUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.