miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 5' -62.6 NC_001806.1 + 134183 1.07 0.000881
Target:  5'- cCUCCUCCGACGCCCAGCAGCUCCCCAu -3'
miRNA:   3'- -GAGGAGGCUGCGGGUCGUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 69256 0.78 0.123129
Target:  5'- cCUCCgCCGGCGCCCAGCAGCggCUgCu -3'
miRNA:   3'- -GAGGaGGCUGCGGGUCGUCGa-GGgGu -5'
5558 5' -62.6 NC_001806.1 + 123759 0.74 0.215859
Target:  5'- -gCCUCCgGGCGcCCCAGCGGC-CCCUc -3'
miRNA:   3'- gaGGAGG-CUGC-GGGUCGUCGaGGGGu -5'
5558 5' -62.6 NC_001806.1 + 30258 0.74 0.215859
Target:  5'- -gCCUCCGGgGCCCGGCccccGCgCCCCGg -3'
miRNA:   3'- gaGGAGGCUgCGGGUCGu---CGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 49342 0.73 0.248378
Target:  5'- aUCCcaucgCCGAgCGuCCCGGCAGCgCCCCGg -3'
miRNA:   3'- gAGGa----GGCU-GC-GGGUCGUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 697 0.73 0.266106
Target:  5'- cCUCC-CCGGC-CCCAGCc-CUCCCCGg -3'
miRNA:   3'- -GAGGaGGCUGcGGGUCGucGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 665 0.73 0.266106
Target:  5'- cCUCC-CCGGC-CCCAGCc-CUCCCCGg -3'
miRNA:   3'- -GAGGaGGCUGcGGGUCGucGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 633 0.73 0.266106
Target:  5'- cCUCC-CCGGC-CCCAGCc-CUCCCCGg -3'
miRNA:   3'- -GAGGaGGCUGcGGGUCGucGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 130996 0.72 0.272239
Target:  5'- gUCg-CCGACGCCCuaAGCGGCUgucCCCCGc -3'
miRNA:   3'- gAGgaGGCUGCGGG--UCGUCGA---GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 95762 0.72 0.278485
Target:  5'- uCUCCUgCGACaccaggugGaCCCGGCccuGCUCCCCAg -3'
miRNA:   3'- -GAGGAgGCUG--------C-GGGUCGu--CGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 30466 0.72 0.291318
Target:  5'- -cCCUCCGGCGCC--GCcccGCUCCCCu -3'
miRNA:   3'- gaGGAGGCUGCGGguCGu--CGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 4194 0.72 0.291318
Target:  5'- ----cCCGGCGCCgGGCcacGGCUCCCCGc -3'
miRNA:   3'- gaggaGGCUGCGGgUCG---UCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 100732 0.71 0.318362
Target:  5'- cCUCCacgCCgGGCGCCCAGguGCg-CCCGg -3'
miRNA:   3'- -GAGGa--GG-CUGCGGGUCguCGagGGGU- -5'
5558 5' -62.6 NC_001806.1 + 70144 0.71 0.318362
Target:  5'- cCUCCUcgaaCCGGcCGCCCggGGCGGCcucggCCCCAc -3'
miRNA:   3'- -GAGGA----GGCU-GCGGG--UCGUCGa----GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 21273 0.71 0.325411
Target:  5'- -aCCUCgaCGACGCCCGGCgggacgggagGGC-CCCCGc -3'
miRNA:   3'- gaGGAG--GCUGCGGGUCG----------UCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 4112 0.71 0.332576
Target:  5'- cCUCCUCCGccucggGCGCCCcccagaggcccgGGCGGCugUCgCCCAg -3'
miRNA:   3'- -GAGGAGGC------UGCGGG------------UCGUCG--AG-GGGU- -5'
5558 5' -62.6 NC_001806.1 + 52026 0.7 0.354758
Target:  5'- uUCCUCC--CGCUCGGCGGCagCCCGg -3'
miRNA:   3'- gAGGAGGcuGCGGGUCGUCGagGGGU- -5'
5558 5' -62.6 NC_001806.1 + 130135 0.7 0.385923
Target:  5'- uUCCUgCGGCcagugGCCCGcGCAGUUCuCCCAg -3'
miRNA:   3'- gAGGAgGCUG-----CGGGU-CGUCGAG-GGGU- -5'
5558 5' -62.6 NC_001806.1 + 106698 0.69 0.402168
Target:  5'- gCUCUUCCcGgGCCCccgGGCGGC-CCCCGg -3'
miRNA:   3'- -GAGGAGGcUgCGGG---UCGUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 146642 0.69 0.410452
Target:  5'- gUCCcgggUCGACGCCCc-CuGCUCCCCGg -3'
miRNA:   3'- gAGGa---GGCUGCGGGucGuCGAGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.