miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 5' -62.6 NC_001806.1 + 546 0.68 0.498695
Target:  5'- gCUCCUCCaGACGuacCCCGGCGcaacacaccGCUCCUg- -3'
miRNA:   3'- -GAGGAGG-CUGC---GGGUCGU---------CGAGGGgu -5'
5558 5' -62.6 NC_001806.1 + 601 0.66 0.623892
Target:  5'- cCUCC-CCaGC-CCCAGCc-CUCCCCAg -3'
miRNA:   3'- -GAGGaGGcUGcGGGUCGucGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 633 0.73 0.266106
Target:  5'- cCUCC-CCGGC-CCCAGCc-CUCCCCGg -3'
miRNA:   3'- -GAGGaGGCUGcGGGUCGucGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 665 0.73 0.266106
Target:  5'- cCUCC-CCGGC-CCCAGCc-CUCCCCGg -3'
miRNA:   3'- -GAGGaGGCUGcGGGUCGucGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 697 0.73 0.266106
Target:  5'- cCUCC-CCGGC-CCCAGCc-CUCCCCGg -3'
miRNA:   3'- -GAGGaGGCUGcGGGUCGucGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 729 0.67 0.565176
Target:  5'- cCUCC-CCGGCGCguCCcGC-GCUCCCUc -3'
miRNA:   3'- -GAGGaGGCUGCG--GGuCGuCGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 1414 0.67 0.565176
Target:  5'- -cCCguggCCGAgGCCCAGCGaaUCCCgGg -3'
miRNA:   3'- gaGGa---GGCUgCGGGUCGUcgAGGGgU- -5'
5558 5' -62.6 NC_001806.1 + 3664 0.69 0.418841
Target:  5'- aUCUgcgCCGGCGCCgG--GGCUCCCCGc -3'
miRNA:   3'- gAGGa--GGCUGCGGgUcgUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 4112 0.71 0.332576
Target:  5'- cCUCCUCCGccucggGCGCCCcccagaggcccgGGCGGCugUCgCCCAg -3'
miRNA:   3'- -GAGGAGGC------UGCGGG------------UCGUCG--AG-GGGU- -5'
5558 5' -62.6 NC_001806.1 + 4194 0.72 0.291318
Target:  5'- ----cCCGGCGCCgGGCcacGGCUCCCCGc -3'
miRNA:   3'- gaggaGGCUGCGGgUCG---UCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 5032 0.66 0.614053
Target:  5'- cCUCCUCCGucuccGCGCCCcacccgAG-GGCcCCCCGc -3'
miRNA:   3'- -GAGGAGGC-----UGCGGG------UCgUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 6063 0.67 0.536322
Target:  5'- aCUCCgcgCCGGC-CCCGGgGGCgggCCCgGg -3'
miRNA:   3'- -GAGGa--GGCUGcGGGUCgUCGa--GGGgU- -5'
5558 5' -62.6 NC_001806.1 + 21273 0.71 0.325411
Target:  5'- -aCCUCgaCGACGCCCGGCgggacgggagGGC-CCCCGc -3'
miRNA:   3'- gaGGAG--GCUGCGGGUCG----------UCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 21395 0.68 0.48947
Target:  5'- gUCCggacgaucCCGACGCCCGaccccGCGGCcucgccgCCCCGg -3'
miRNA:   3'- gAGGa-------GGCUGCGGGU-----CGUCGa------GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 21780 0.67 0.517372
Target:  5'- gUCCgucgagCgCGGCG-CCGGCAGC-CCCCGg -3'
miRNA:   3'- gAGGa-----G-GCUGCgGGUCGUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 21843 0.66 0.594419
Target:  5'- uCUCCgaggCCG-CGCCCaagccccgggcGGCGGCgaggacCCCCGc -3'
miRNA:   3'- -GAGGa---GGCuGCGGG-----------UCGUCGa-----GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 22053 0.67 0.565176
Target:  5'- ----gCCGugGCCCGGCgccgGGC-CCCCGc -3'
miRNA:   3'- gaggaGGCugCGGGUCG----UCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 22171 0.67 0.555508
Target:  5'- -gCCUCgGGCGcCCCGGCGGCcgugugggCgCCCGa -3'
miRNA:   3'- gaGGAGgCUGC-GGGUCGUCGa-------G-GGGU- -5'
5558 5' -62.6 NC_001806.1 + 22339 0.68 0.462291
Target:  5'- -aUCUCgGGCGCCgcgcgcaaCAGCAGCUCCUUc -3'
miRNA:   3'- gaGGAGgCUGCGG--------GUCGUCGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 23238 0.66 0.623892
Target:  5'- -gCCgCCGACGCgCUGGCGGCcgCCgCCGc -3'
miRNA:   3'- gaGGaGGCUGCG-GGUCGUCGa-GG-GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.