miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 5' -62.6 NC_001806.1 + 150231 0.66 0.617987
Target:  5'- cCUCCcgCCGACGCaaCAGgGGCUuggccugcgucggugCCCCGg -3'
miRNA:   3'- -GAGGa-GGCUGCGg-GUCgUCGA---------------GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 148852 0.69 0.44462
Target:  5'- -cCCUgCGGC-CCCAGCAGC-CCCg- -3'
miRNA:   3'- gaGGAgGCUGcGGGUCGUCGaGGGgu -5'
5558 5' -62.6 NC_001806.1 + 147539 0.67 0.565176
Target:  5'- -cCCUCC-ACGCCCGGCc-C-CCCCGa -3'
miRNA:   3'- gaGGAGGcUGCGGGUCGucGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 146642 0.69 0.410452
Target:  5'- gUCCcgggUCGACGCCCc-CuGCUCCCCGg -3'
miRNA:   3'- gAGGa---GGCUGCGGGucGuCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 134730 0.68 0.480325
Target:  5'- -aCCUCCGACGUCaCAuaGGCgUCCUCGg -3'
miRNA:   3'- gaGGAGGCUGCGG-GUcgUCG-AGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 134183 1.07 0.000881
Target:  5'- cCUCCUCCGACGCCCAGCAGCUCCCCAu -3'
miRNA:   3'- -GAGGAGGCUGCGGGUCGUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 130996 0.72 0.272239
Target:  5'- gUCg-CCGACGCCCuaAGCGGCUgucCCCCGc -3'
miRNA:   3'- gAGgaGGCUGCGGG--UCGUCGA---GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 130135 0.7 0.385923
Target:  5'- uUCCUgCGGCcagugGCCCGcGCAGUUCuCCCAg -3'
miRNA:   3'- gAGGAgGCUG-----CGGGU-CGUCGAG-GGGU- -5'
5558 5' -62.6 NC_001806.1 + 127055 0.67 0.565176
Target:  5'- gUUCUCCGGgGCCCGGCccugcuGCUgCCgAa -3'
miRNA:   3'- gAGGAGGCUgCGGGUCGu-----CGAgGGgU- -5'
5558 5' -62.6 NC_001806.1 + 126654 0.66 0.614053
Target:  5'- -aCCUCgGACGCCaCAcCAuCUCCCCc -3'
miRNA:   3'- gaGGAGgCUGCGG-GUcGUcGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 123759 0.74 0.215859
Target:  5'- -gCCUCCgGGCGcCCCAGCGGC-CCCUc -3'
miRNA:   3'- gaGGAGG-CUGC-GGGUCGUCGaGGGGu -5'
5558 5' -62.6 NC_001806.1 + 109179 0.69 0.410452
Target:  5'- gCUCCUCCaGCGCCCGgucuGCGGCauaaaacaCCCAc -3'
miRNA:   3'- -GAGGAGGcUGCGGGU----CGUCGag------GGGU- -5'
5558 5' -62.6 NC_001806.1 + 107345 0.67 0.536322
Target:  5'- gUCCUCCGGCaGCCguucuUGGCuGGCgUCCCCu -3'
miRNA:   3'- gAGGAGGCUG-CGG-----GUCG-UCG-AGGGGu -5'
5558 5' -62.6 NC_001806.1 + 107219 0.65 0.630783
Target:  5'- -cCCUCggcguacgacgcagUGGCGCCCAGC-GCagCCCAu -3'
miRNA:   3'- gaGGAG--------------GCUGCGGGUCGuCGagGGGU- -5'
5558 5' -62.6 NC_001806.1 + 106903 0.66 0.594419
Target:  5'- uCUCUUCUGGCGCCUAacGgGGCUgCUCGc -3'
miRNA:   3'- -GAGGAGGCUGCGGGU--CgUCGAgGGGU- -5'
5558 5' -62.6 NC_001806.1 + 106785 0.66 0.614053
Target:  5'- -gCCUCCGcCGCgUgGGCGGCUaCCCGg -3'
miRNA:   3'- gaGGAGGCuGCG-GgUCGUCGAgGGGU- -5'
5558 5' -62.6 NC_001806.1 + 106698 0.69 0.402168
Target:  5'- gCUCUUCCcGgGCCCccgGGCGGC-CCCCGg -3'
miRNA:   3'- -GAGGAGGcUgCGGG---UCGUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 100732 0.71 0.318362
Target:  5'- cCUCCacgCCgGGCGCCCAGguGCg-CCCGg -3'
miRNA:   3'- -GAGGa--GG-CUGCGGGUCguCGagGGGU- -5'
5558 5' -62.6 NC_001806.1 + 95762 0.72 0.278485
Target:  5'- uCUCCUgCGACaccaggugGaCCCGGCccuGCUCCCCAg -3'
miRNA:   3'- -GAGGAgGCUG--------C-GGGUCGu--CGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 86378 0.68 0.480325
Target:  5'- aCUCCUCCGcgggGCGCUCggcuaacgcGGCGGCcgCUCCGg -3'
miRNA:   3'- -GAGGAGGC----UGCGGG---------UCGUCGa-GGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.