miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 5' -62.6 NC_001806.1 + 23380 0.66 0.614053
Target:  5'- --gCUCgGACGCCCGcGCccccCUCCCCGc -3'
miRNA:   3'- gagGAGgCUGCGGGU-CGuc--GAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 23589 0.66 0.623892
Target:  5'- -cCCgcggCCGcCGCCCuggaGGCcuacuGCUCCCCGc -3'
miRNA:   3'- gaGGa---GGCuGCGGG----UCGu----CGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 30258 0.74 0.215859
Target:  5'- -gCCUCCGGgGCCCGGCccccGCgCCCCGg -3'
miRNA:   3'- gaGGAGGCUgCGGGUCGu---CGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 30466 0.72 0.291318
Target:  5'- -cCCUCCGGCGCC--GCcccGCUCCCCu -3'
miRNA:   3'- gaGGAGGCUGCGGguCGu--CGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 38052 0.69 0.44462
Target:  5'- -cCCUgCGACGCCCA-CGGCgUCCgCCGc -3'
miRNA:   3'- gaGGAgGCUGCGGGUcGUCG-AGG-GGU- -5'
5558 5' -62.6 NC_001806.1 + 38364 0.67 0.536322
Target:  5'- aCUCCccgcugcugUCCGAuuccagguCGUCgCGGCGGCUCUCCGc -3'
miRNA:   3'- -GAGG---------AGGCU--------GCGG-GUCGUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 49342 0.73 0.248378
Target:  5'- aUCCcaucgCCGAgCGuCCCGGCAGCgCCCCGg -3'
miRNA:   3'- gAGGa----GGCU-GC-GGGUCGUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 49440 0.67 0.556472
Target:  5'- gUCCUCCGcAgGCCCGGCAGgggggauaccugggUCCCGu -3'
miRNA:   3'- gAGGAGGC-UgCGGGUCGUCga------------GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 52026 0.7 0.354758
Target:  5'- uUCCUCC--CGCUCGGCGGCagCCCGg -3'
miRNA:   3'- gAGGAGGcuGCGGGUCGUCGagGGGU- -5'
5558 5' -62.6 NC_001806.1 + 57045 0.67 0.526815
Target:  5'- -cCCggggCCGGgGCCCccGGCugcgugccgGGCUCCCCGa -3'
miRNA:   3'- gaGGa---GGCUgCGGG--UCG---------UCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 57365 0.66 0.591482
Target:  5'- gUCCUCCGgggacACgGCCCGGUGGCUgucguugcggagcaUCCCGc -3'
miRNA:   3'- gAGGAGGC-----UG-CGGGUCGUCGA--------------GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 60732 0.69 0.44462
Target:  5'- aUCCa-CGACGCCCcagAGUcccuggacuGGCUCCCCGa -3'
miRNA:   3'- gAGGagGCUGCGGG---UCG---------UCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 69256 0.78 0.123129
Target:  5'- cCUCCgCCGGCGCCCAGCAGCggCUgCu -3'
miRNA:   3'- -GAGGaGGCUGCGGGUCGUCGa-GGgGu -5'
5558 5' -62.6 NC_001806.1 + 69858 0.68 0.48947
Target:  5'- -cCCUCgGGCaGCCCAGCcacGC-CCCCu -3'
miRNA:   3'- gaGGAGgCUG-CGGGUCGu--CGaGGGGu -5'
5558 5' -62.6 NC_001806.1 + 70144 0.71 0.318362
Target:  5'- cCUCCUcgaaCCGGcCGCCCggGGCGGCcucggCCCCAc -3'
miRNA:   3'- -GAGGA----GGCU-GCGGG--UCGUCGa----GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 77787 0.69 0.44462
Target:  5'- -cCCUCagCGACGCCCAGgccgccaacuuuCAGCUCUUCGg -3'
miRNA:   3'- gaGGAG--GCUGCGGGUC------------GUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 79670 0.66 0.627829
Target:  5'- gUCCgggucgcgcgcgcgCCGAcacCGCCgGGCAcGCUCCCUg -3'
miRNA:   3'- gAGGa-------------GGCU---GCGGgUCGU-CGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 84871 0.66 0.594419
Target:  5'- gCUCCUCUG-CGgCCGGCGGgaCUCUg -3'
miRNA:   3'- -GAGGAGGCuGCgGGUCGUCgaGGGGu -5'
5558 5' -62.6 NC_001806.1 + 86378 0.68 0.480325
Target:  5'- aCUCCUCCGcgggGCGCUCggcuaacgcGGCGGCcgCUCCGg -3'
miRNA:   3'- -GAGGAGGC----UGCGGG---------UCGUCGa-GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 95762 0.72 0.278485
Target:  5'- uCUCCUgCGACaccaggugGaCCCGGCccuGCUCCCCAg -3'
miRNA:   3'- -GAGGAgGCUG--------C-GGGUCGu--CGAGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.