miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 5' -62.6 NC_001806.1 + 22171 0.67 0.555508
Target:  5'- -gCCUCgGGCGcCCCGGCGGCcgugugggCgCCCGa -3'
miRNA:   3'- gaGGAGgCUGC-GGGUCGUCGa-------G-GGGU- -5'
5558 5' -62.6 NC_001806.1 + 107345 0.67 0.536322
Target:  5'- gUCCUCCGGCaGCCguucuUGGCuGGCgUCCCCu -3'
miRNA:   3'- gAGGAGGCUG-CGG-----GUCG-UCG-AGGGGu -5'
5558 5' -62.6 NC_001806.1 + 38364 0.67 0.536322
Target:  5'- aCUCCccgcugcugUCCGAuuccagguCGUCgCGGCGGCUCUCCGc -3'
miRNA:   3'- -GAGG---------AGGCU--------GCGG-GUCGUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 6063 0.67 0.536322
Target:  5'- aCUCCgcgCCGGC-CCCGGgGGCgggCCCgGg -3'
miRNA:   3'- -GAGGa--GGCUGcGGGUCgUCGa--GGGgU- -5'
5558 5' -62.6 NC_001806.1 + 57045 0.67 0.526815
Target:  5'- -cCCggggCCGGgGCCCccGGCugcgugccgGGCUCCCCGa -3'
miRNA:   3'- gaGGa---GGCUgCGGG--UCG---------UCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 21780 0.67 0.517372
Target:  5'- gUCCgucgagCgCGGCG-CCGGCAGC-CCCCGg -3'
miRNA:   3'- gAGGa-----G-GCUGCgGGUCGUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 546 0.68 0.498695
Target:  5'- gCUCCUCCaGACGuacCCCGGCGcaacacaccGCUCCUg- -3'
miRNA:   3'- -GAGGAGG-CUGC---GGGUCGU---------CGAGGGgu -5'
5558 5' -62.6 NC_001806.1 + 21395 0.68 0.48947
Target:  5'- gUCCggacgaucCCGACGCCCGaccccGCGGCcucgccgCCCCGg -3'
miRNA:   3'- gAGGa-------GGCUGCGGGU-----CGUCGa------GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 69858 0.68 0.48947
Target:  5'- -cCCUCgGGCaGCCCAGCcacGC-CCCCu -3'
miRNA:   3'- gaGGAGgCUG-CGGGUCGu--CGaGGGGu -5'
5558 5' -62.6 NC_001806.1 + 134730 0.68 0.480325
Target:  5'- -aCCUCCGACGUCaCAuaGGCgUCCUCGg -3'
miRNA:   3'- gaGGAGGCUGCGG-GUcgUCG-AGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 86378 0.68 0.480325
Target:  5'- aCUCCUCCGcgggGCGCUCggcuaacgcGGCGGCcgCUCCGg -3'
miRNA:   3'- -GAGGAGGC----UGCGGG---------UCGUCGa-GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 22339 0.68 0.462291
Target:  5'- -aUCUCgGGCGCCgcgcgcaaCAGCAGCUCCUUc -3'
miRNA:   3'- gaGGAGgCUGCGG--------GUCGUCGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 77787 0.69 0.44462
Target:  5'- -cCCUCagCGACGCCCAGgccgccaacuuuCAGCUCUUCGg -3'
miRNA:   3'- gaGGAG--GCUGCGGGUC------------GUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 60732 0.69 0.44462
Target:  5'- aUCCa-CGACGCCCcagAGUcccuggacuGGCUCCCCGa -3'
miRNA:   3'- gAGGagGCUGCGGG---UCG---------UCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 148852 0.69 0.44462
Target:  5'- -cCCUgCGGC-CCCAGCAGC-CCCg- -3'
miRNA:   3'- gaGGAgGCUGcGGGUCGUCGaGGGgu -5'
5558 5' -62.6 NC_001806.1 + 38052 0.69 0.44462
Target:  5'- -cCCUgCGACGCCCA-CGGCgUCCgCCGc -3'
miRNA:   3'- gaGGAgGCUGCGGGUcGUCG-AGG-GGU- -5'
5558 5' -62.6 NC_001806.1 + 3664 0.69 0.418841
Target:  5'- aUCUgcgCCGGCGCCgG--GGCUCCCCGc -3'
miRNA:   3'- gAGGa--GGCUGCGGgUcgUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 146642 0.69 0.410452
Target:  5'- gUCCcgggUCGACGCCCc-CuGCUCCCCGg -3'
miRNA:   3'- gAGGa---GGCUGCGGGucGuCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 109179 0.69 0.410452
Target:  5'- gCUCCUCCaGCGCCCGgucuGCGGCauaaaacaCCCAc -3'
miRNA:   3'- -GAGGAGGcUGCGGGU----CGUCGag------GGGU- -5'
5558 5' -62.6 NC_001806.1 + 106698 0.69 0.402168
Target:  5'- gCUCUUCCcGgGCCCccgGGCGGC-CCCCGg -3'
miRNA:   3'- -GAGGAGGcUgCGGG---UCGUCGaGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.