miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5560 3' -61 NC_001806.1 + 151525 0.66 0.711828
Target:  5'- gCGGUUGggaCGGCGCCCG-UGgGCCcGGg -3'
miRNA:   3'- gGCCGAC---GCCGUGGGUgACaCGGaCC- -5'
5560 3' -61 NC_001806.1 + 149954 0.67 0.623892
Target:  5'- cCUGGCUGCuGCGuCUCGCUccgaGUGCCgaGGu -3'
miRNA:   3'- -GGCCGACGcCGU-GGGUGA----CACGGa-CC- -5'
5560 3' -61 NC_001806.1 + 147211 0.66 0.702202
Target:  5'- cCCGGCggcggaagagGCGGCcCCCGCggggGUCgGGg -3'
miRNA:   3'- -GGCCGa---------CGCCGuGGGUGaca-CGGaCC- -5'
5560 3' -61 NC_001806.1 + 146691 0.77 0.191611
Target:  5'- -aGGCUGCggaaguccaGGCGCCCACUaggGUGcCCUGGu -3'
miRNA:   3'- ggCCGACG---------CCGUGGGUGA---CAC-GGACC- -5'
5560 3' -61 NC_001806.1 + 142358 0.66 0.730883
Target:  5'- gUGGCUgGCGGCcuGCUUgcgACUGUccagcGCCUGGc -3'
miRNA:   3'- gGCCGA-CGCCG--UGGG---UGACA-----CGGACC- -5'
5560 3' -61 NC_001806.1 + 140672 0.73 0.30461
Target:  5'- -aGGCUuuuguugcugcGCGGCGCCCGC-GUGCCgcgcUGGa -3'
miRNA:   3'- ggCCGA-----------CGCCGUGGGUGaCACGG----ACC- -5'
5560 3' -61 NC_001806.1 + 135776 0.73 0.332576
Target:  5'- gCGaaGCUGCGGCGCCCGCccccCCUGGu -3'
miRNA:   3'- gGC--CGACGCCGUGGGUGacacGGACC- -5'
5560 3' -61 NC_001806.1 + 135549 0.66 0.729937
Target:  5'- gCGGCUGCcGCAUCCACcgGUcacggacucggccGCCaGGu -3'
miRNA:   3'- gGCCGACGcCGUGGGUGa-CA-------------CGGaCC- -5'
5560 3' -61 NC_001806.1 + 134913 0.68 0.565177
Target:  5'- aCCaGGCUGCGGUcCCCGgcgaUG-GCCUGc -3'
miRNA:   3'- -GG-CCGACGCCGuGGGUg---ACaCGGACc -5'
5560 3' -61 NC_001806.1 + 133283 1.1 0.000905
Target:  5'- uCCGGCUGCGGCACCCACUGUGCCUGGc -3'
miRNA:   3'- -GGCCGACGCCGUGGGUGACACGGACC- -5'
5560 3' -61 NC_001806.1 + 132739 0.68 0.608155
Target:  5'- cCCGGCguggccucgGCGGCagccggaugccuccuGCCCGCgGUGCg-GGa -3'
miRNA:   3'- -GGCCGa--------CGCCG---------------UGGGUGaCACGgaCC- -5'
5560 3' -61 NC_001806.1 + 119217 0.68 0.574889
Target:  5'- -aGGCUGCGGC-CCaC-CUGUccauggGUCUGGg -3'
miRNA:   3'- ggCCGACGCCGuGG-GuGACA------CGGACC- -5'
5560 3' -61 NC_001806.1 + 109304 0.67 0.653415
Target:  5'- gCCGGCgaaacgccaGCGGgGCCCACgcggucaaUGUGUUUGa -3'
miRNA:   3'- -GGCCGa--------CGCCgUGGGUG--------ACACGGACc -5'
5560 3' -61 NC_001806.1 + 108651 0.67 0.623892
Target:  5'- gUGGCUGCGgacauGCGCCCGCg--GCCa-- -3'
miRNA:   3'- gGCCGACGC-----CGUGGGUGacaCGGacc -5'
5560 3' -61 NC_001806.1 + 103151 0.83 0.072167
Target:  5'- -gGGCaGCGGCAgCCGCUGUGCgCUGGg -3'
miRNA:   3'- ggCCGaCGCCGUgGGUGACACG-GACC- -5'
5560 3' -61 NC_001806.1 + 94718 0.67 0.663235
Target:  5'- aCGaGCUGCGGCGguaccugcCCCACgccGCCgGGc -3'
miRNA:   3'- gGC-CGACGCCGU--------GGGUGacaCGGaCC- -5'
5560 3' -61 NC_001806.1 + 94173 0.66 0.711828
Target:  5'- -gGcGCUGCGGCGUCguCUGaggccggGCCUGGa -3'
miRNA:   3'- ggC-CGACGCCGUGGguGACa------CGGACC- -5'
5560 3' -61 NC_001806.1 + 92898 0.67 0.633736
Target:  5'- -aGGCUGCGGCcgcguggUCCGCgcagGgcggggcggGCCUGGa -3'
miRNA:   3'- ggCCGACGCCGu------GGGUGa---Ca--------CGGACC- -5'
5560 3' -61 NC_001806.1 + 90240 0.67 0.674009
Target:  5'- gCGGCgauuccgacgucgccGUGGCGCCC-CUGgucguggGCCUGa -3'
miRNA:   3'- gGCCGa--------------CGCCGUGGGuGACa------CGGACc -5'
5560 3' -61 NC_001806.1 + 78909 0.69 0.517372
Target:  5'- uCCGcGCUcaucgccgaGCGGCcccucgcccgggGCCCGCcGUGUCUGGu -3'
miRNA:   3'- -GGC-CGA---------CGCCG------------UGGGUGaCACGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.