Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5561 | 5' | -58.1 | NC_001806.1 | + | 25634 | 0.66 | 0.8412 |
Target: 5'- -gCUGGGGCUgGGGagggcUGGGG-CUGGg -3' miRNA: 3'- aaGACCCCGGgCUCaa---ACUCCaGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 55561 | 0.66 | 0.824794 |
Target: 5'- ---gGGGGUgguguuguucUUGGGUUUGGGGUCgGGg -3' miRNA: 3'- aagaCCCCG----------GGCUCAAACUCCAGgCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 66553 | 0.66 | 0.816331 |
Target: 5'- gUC-GGGGUUUcGGUUUGGGG-CCGGg -3' miRNA: 3'- aAGaCCCCGGGcUCAAACUCCaGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 147826 | 0.66 | 0.807706 |
Target: 5'- ---gGGGGCCUGuGgggaGAGG-CCGGg -3' miRNA: 3'- aagaCCCCGGGCuCaaa-CUCCaGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 50509 | 0.66 | 0.798925 |
Target: 5'- gUCgUGGGGgCCGAGcacGAGGcgCUGGg -3' miRNA: 3'- aAG-ACCCCgGGCUCaaaCUCCa-GGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 5096 | 0.67 | 0.789998 |
Target: 5'- ---cGGcGGCCCGucggUGGGGcCCGGg -3' miRNA: 3'- aagaCC-CCGGGCucaaACUCCaGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 95446 | 0.67 | 0.789998 |
Target: 5'- ---aGGGGCCCGAGacgUGGGGggacaucgCCa- -3' miRNA: 3'- aagaCCCCGGGCUCaa-ACUCCa-------GGcc -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 14399 | 0.67 | 0.780932 |
Target: 5'- -aCUGGGGCgUGcGUUaaGGGGUCCGu -3' miRNA: 3'- aaGACCCCGgGCuCAAa-CUCCAGGCc -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 151078 | 0.67 | 0.771736 |
Target: 5'- gUCgcgGGGGUCgCGGGggucgcgGGGGUCgCGGg -3' miRNA: 3'- aAGa--CCCCGG-GCUCaaa----CUCCAG-GCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 10489 | 0.67 | 0.771736 |
Target: 5'- -gCUGGGG-UCGGGggUGGGGUCgGa -3' miRNA: 3'- aaGACCCCgGGCUCaaACUCCAGgCc -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 99670 | 0.68 | 0.733827 |
Target: 5'- -gCUGGGGCauaCGGGggagUGGGGgcaugggacgCCGGa -3' miRNA: 3'- aaGACCCCGg--GCUCaa--ACUCCa---------GGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 74032 | 0.68 | 0.724113 |
Target: 5'- -cCUGGGcCCCGAGgccgUUcAGGUUCGGc -3' miRNA: 3'- aaGACCCcGGGCUCa---AAcUCCAGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 122574 | 0.68 | 0.704462 |
Target: 5'- ---gGGGGCCCGuGGUcuccgUGAGG-CUGGa -3' miRNA: 3'- aagaCCCCGGGC-UCAa----ACUCCaGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 59998 | 0.7 | 0.624158 |
Target: 5'- ---cGGGGaCCCGGGggacggccGGGUCCGGa -3' miRNA: 3'- aagaCCCC-GGGCUCaaac----UCCAGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 147784 | 0.7 | 0.624158 |
Target: 5'- ---gGGGGCCCGGGgcgGGGGg-CGGa -3' miRNA: 3'- aagaCCCCGGGCUCaaaCUCCagGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 22126 | 0.7 | 0.614064 |
Target: 5'- cUCUGGGgggcGCCCGAGgcgGAGGaggcgcgacgCCGGu -3' miRNA: 3'- aAGACCC----CGGGCUCaaaCUCCa---------GGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 19100 | 0.7 | 0.573892 |
Target: 5'- -cUUGGGGCCgaCGGGgugGGGGcCCGGg -3' miRNA: 3'- aaGACCCCGG--GCUCaaaCUCCaGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 37784 | 0.71 | 0.544161 |
Target: 5'- cUCcGGGGCCgGGGcgcgGGGGUCCGcGg -3' miRNA: 3'- aAGaCCCCGGgCUCaaa-CUCCAGGC-C- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 27060 | 0.71 | 0.544161 |
Target: 5'- -cCUGGGGCCCGAGgcccguGcCCGGg -3' miRNA: 3'- aaGACCCCGGGCUCaaacucCaGGCC- -5' |
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5561 | 5' | -58.1 | NC_001806.1 | + | 25570 | 0.73 | 0.449539 |
Target: 5'- -gCUGGGGCCgGGGagggcUGGGG-CCGGg -3' miRNA: 3'- aaGACCCCGGgCUCaa---ACUCCaGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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