miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 5' -58.1 NC_001806.1 + 25634 0.66 0.8412
Target:  5'- -gCUGGGGCUgGGGagggcUGGGG-CUGGg -3'
miRNA:   3'- aaGACCCCGGgCUCaa---ACUCCaGGCC- -5'
5561 5' -58.1 NC_001806.1 + 55561 0.66 0.824794
Target:  5'- ---gGGGGUgguguuguucUUGGGUUUGGGGUCgGGg -3'
miRNA:   3'- aagaCCCCG----------GGCUCAAACUCCAGgCC- -5'
5561 5' -58.1 NC_001806.1 + 66553 0.66 0.816331
Target:  5'- gUC-GGGGUUUcGGUUUGGGG-CCGGg -3'
miRNA:   3'- aAGaCCCCGGGcUCAAACUCCaGGCC- -5'
5561 5' -58.1 NC_001806.1 + 147826 0.66 0.807706
Target:  5'- ---gGGGGCCUGuGgggaGAGG-CCGGg -3'
miRNA:   3'- aagaCCCCGGGCuCaaa-CUCCaGGCC- -5'
5561 5' -58.1 NC_001806.1 + 50509 0.66 0.798925
Target:  5'- gUCgUGGGGgCCGAGcacGAGGcgCUGGg -3'
miRNA:   3'- aAG-ACCCCgGGCUCaaaCUCCa-GGCC- -5'
5561 5' -58.1 NC_001806.1 + 5096 0.67 0.789998
Target:  5'- ---cGGcGGCCCGucggUGGGGcCCGGg -3'
miRNA:   3'- aagaCC-CCGGGCucaaACUCCaGGCC- -5'
5561 5' -58.1 NC_001806.1 + 95446 0.67 0.789998
Target:  5'- ---aGGGGCCCGAGacgUGGGGggacaucgCCa- -3'
miRNA:   3'- aagaCCCCGGGCUCaa-ACUCCa-------GGcc -5'
5561 5' -58.1 NC_001806.1 + 14399 0.67 0.780932
Target:  5'- -aCUGGGGCgUGcGUUaaGGGGUCCGu -3'
miRNA:   3'- aaGACCCCGgGCuCAAa-CUCCAGGCc -5'
5561 5' -58.1 NC_001806.1 + 151078 0.67 0.771736
Target:  5'- gUCgcgGGGGUCgCGGGggucgcgGGGGUCgCGGg -3'
miRNA:   3'- aAGa--CCCCGG-GCUCaaa----CUCCAG-GCC- -5'
5561 5' -58.1 NC_001806.1 + 10489 0.67 0.771736
Target:  5'- -gCUGGGG-UCGGGggUGGGGUCgGa -3'
miRNA:   3'- aaGACCCCgGGCUCaaACUCCAGgCc -5'
5561 5' -58.1 NC_001806.1 + 99670 0.68 0.733827
Target:  5'- -gCUGGGGCauaCGGGggagUGGGGgcaugggacgCCGGa -3'
miRNA:   3'- aaGACCCCGg--GCUCaa--ACUCCa---------GGCC- -5'
5561 5' -58.1 NC_001806.1 + 74032 0.68 0.724113
Target:  5'- -cCUGGGcCCCGAGgccgUUcAGGUUCGGc -3'
miRNA:   3'- aaGACCCcGGGCUCa---AAcUCCAGGCC- -5'
5561 5' -58.1 NC_001806.1 + 122574 0.68 0.704462
Target:  5'- ---gGGGGCCCGuGGUcuccgUGAGG-CUGGa -3'
miRNA:   3'- aagaCCCCGGGC-UCAa----ACUCCaGGCC- -5'
5561 5' -58.1 NC_001806.1 + 59998 0.7 0.624158
Target:  5'- ---cGGGGaCCCGGGggacggccGGGUCCGGa -3'
miRNA:   3'- aagaCCCC-GGGCUCaaac----UCCAGGCC- -5'
5561 5' -58.1 NC_001806.1 + 147784 0.7 0.624158
Target:  5'- ---gGGGGCCCGGGgcgGGGGg-CGGa -3'
miRNA:   3'- aagaCCCCGGGCUCaaaCUCCagGCC- -5'
5561 5' -58.1 NC_001806.1 + 22126 0.7 0.614064
Target:  5'- cUCUGGGgggcGCCCGAGgcgGAGGaggcgcgacgCCGGu -3'
miRNA:   3'- aAGACCC----CGGGCUCaaaCUCCa---------GGCC- -5'
5561 5' -58.1 NC_001806.1 + 19100 0.7 0.573892
Target:  5'- -cUUGGGGCCgaCGGGgugGGGGcCCGGg -3'
miRNA:   3'- aaGACCCCGG--GCUCaaaCUCCaGGCC- -5'
5561 5' -58.1 NC_001806.1 + 37784 0.71 0.544161
Target:  5'- cUCcGGGGCCgGGGcgcgGGGGUCCGcGg -3'
miRNA:   3'- aAGaCCCCGGgCUCaaa-CUCCAGGC-C- -5'
5561 5' -58.1 NC_001806.1 + 27060 0.71 0.544161
Target:  5'- -cCUGGGGCCCGAGgcccguGcCCGGg -3'
miRNA:   3'- aaGACCCCGGGCUCaaacucCaGGCC- -5'
5561 5' -58.1 NC_001806.1 + 25570 0.73 0.449539
Target:  5'- -gCUGGGGCCgGGGagggcUGGGG-CCGGg -3'
miRNA:   3'- aaGACCCCGGgCUCaa---ACUCCaGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.