miRNA display CGI


Results 61 - 80 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 49373 0.67 0.839273
Target:  5'- gGGCccgaugcgGCCCGUAGCcAGUCGguGCGCGGu -3'
miRNA:   3'- -CCG--------UGGGCGUUGcUCAGUgcCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 66184 0.67 0.839273
Target:  5'- cGGaCGCCCGggucaacgaaCAACGAGUgACaGCGgGGa -3'
miRNA:   3'- -CC-GUGGGC----------GUUGCUCAgUGcCGUgCC- -5'
5562 3' -57.2 NC_001806.1 + 91017 0.67 0.839273
Target:  5'- cGGCGgCgGCAA-GGG-CGCGGCggGCGGg -3'
miRNA:   3'- -CCGUgGgCGUUgCUCaGUGCCG--UGCC- -5'
5562 3' -57.2 NC_001806.1 + 70829 0.67 0.839273
Target:  5'- cGGCgucugucgGCCUGCuauCaAGcCGCGGCGCGGc -3'
miRNA:   3'- -CCG--------UGGGCGuu-GcUCaGUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 23133 0.67 0.839273
Target:  5'- cGGgACCCGCGccugcCGAGcucCGCGGCcgccgccgccGCGGa -3'
miRNA:   3'- -CCgUGGGCGUu----GCUCa--GUGCCG----------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 144799 0.67 0.839273
Target:  5'- aGGCcgcguacgGCCCGgGACGAGgggcccccgacCGCGGCGgucCGGg -3'
miRNA:   3'- -CCG--------UGGGCgUUGCUCa----------GUGCCGU---GCC- -5'
5562 3' -57.2 NC_001806.1 + 21933 0.67 0.839273
Target:  5'- uGGcCGgCCGCGacgccACGGGcccuUCACGGC-CGGg -3'
miRNA:   3'- -CC-GUgGGCGU-----UGCUC----AGUGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 31090 0.67 0.831207
Target:  5'- uGGCgACCCgGCuGCGGGcCGCGGUcccCGGc -3'
miRNA:   3'- -CCG-UGGG-CGuUGCUCaGUGCCGu--GCC- -5'
5562 3' -57.2 NC_001806.1 + 60882 0.67 0.831207
Target:  5'- aGGaCAUCCGCGACGAaaaCcUGGCGCGa -3'
miRNA:   3'- -CC-GUGGGCGUUGCUca-GuGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 5345 0.67 0.831207
Target:  5'- cGCGCuucguCCGCGuauCGGcGUCcCGGCGCGGc -3'
miRNA:   3'- cCGUG-----GGCGUu--GCU-CAGuGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 25930 0.67 0.831207
Target:  5'- cGCGCgCGCGGCGGGcgugggggCGgGGcCGCGGg -3'
miRNA:   3'- cCGUGgGCGUUGCUCa-------GUgCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 112115 0.68 0.826284
Target:  5'- -uCGCUCGCAACGuccaggccguccucgGGgcguuugagCGCGGCACGGc -3'
miRNA:   3'- ccGUGGGCGUUGC---------------UCa--------GUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 133451 0.68 0.822969
Target:  5'- -aCACgCUGCGACGGGUCcugggccugacaACGGCAUGc -3'
miRNA:   3'- ccGUG-GGCGUUGCUCAG------------UGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 24219 0.68 0.822969
Target:  5'- --gGCCCGcCGACGGGccCGCGGUgucGCGGc -3'
miRNA:   3'- ccgUGGGC-GUUGCUCa-GUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 4903 0.68 0.822969
Target:  5'- aGCugUCGCGGCGAG--ACGGCGucccCGGc -3'
miRNA:   3'- cCGugGGCGUUGCUCagUGCCGU----GCC- -5'
5562 3' -57.2 NC_001806.1 + 41814 0.68 0.822969
Target:  5'- cGGC-CCCGCAauacgcggggGCGGgcGUCAgGGCccCGGg -3'
miRNA:   3'- -CCGuGGGCGU----------UGCU--CAGUgCCGu-GCC- -5'
5562 3' -57.2 NC_001806.1 + 108664 0.68 0.822969
Target:  5'- uGCGCCCGCGGCcAGcgUACaGCACGc -3'
miRNA:   3'- cCGUGGGCGUUGcUCa-GUGcCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 1834 0.68 0.822969
Target:  5'- cGGCACaggCGCAGCGGcggcgcGUCGgGGUACaGGc -3'
miRNA:   3'- -CCGUGg--GCGUUGCU------CAGUgCCGUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 75230 0.68 0.822136
Target:  5'- gGGCGCaCCGCGuccuggucgACGcGGUgacggccCugGGCGCGGc -3'
miRNA:   3'- -CCGUG-GGCGU---------UGC-UCA-------GugCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 148089 0.68 0.814565
Target:  5'- gGGCGCCgaggggggCGCugucCGAGcCGCGGC-CGGc -3'
miRNA:   3'- -CCGUGG--------GCGuu--GCUCaGUGCCGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.