miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 53662 0.67 0.862369
Target:  5'- cGGCAgCCC-CAGCGcGUUGCGGguCGa -3'
miRNA:   3'- -CCGU-GGGcGUUGCuCAGUGCCguGCc -5'
5562 3' -57.2 NC_001806.1 + 92898 0.67 0.862369
Target:  5'- aGGCugCgGCcGCGuGGUCcgcgcaggGCGGgGCGGg -3'
miRNA:   3'- -CCGugGgCGuUGC-UCAG--------UGCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 52872 0.67 0.861627
Target:  5'- aGGCgaccGCCgGCGGCGAcgugccccuccucGUC-CGGCGCGc -3'
miRNA:   3'- -CCG----UGGgCGUUGCU-------------CAGuGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 29436 0.67 0.861627
Target:  5'- --gACCCGCAugGAggccgaggaggccGUCAgggcgGGCACGGc -3'
miRNA:   3'- ccgUGGGCGUugCU-------------CAGUg----CCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 142113 0.67 0.860137
Target:  5'- aGGCGCCgGgaGugGGGUCGuCGGCgucugcuuuuugugGCGGc -3'
miRNA:   3'- -CCGUGGgCg-UugCUCAGU-GCCG--------------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 98435 0.67 0.854861
Target:  5'- -aCACCCGCcACGAGaUCAaGGacaGCGGc -3'
miRNA:   3'- ccGUGGGCGuUGCUC-AGUgCCg--UGCC- -5'
5562 3' -57.2 NC_001806.1 + 51249 0.67 0.854861
Target:  5'- gGGCgucACCaUGCAGCGccGGacgCGCGGCGCGa -3'
miRNA:   3'- -CCG---UGG-GCGUUGC--UCa--GUGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 86816 0.67 0.854099
Target:  5'- cGUACUCGCGgucGCGAGcagcaucUCGCGGCcgAUGGu -3'
miRNA:   3'- cCGUGGGCGU---UGCUC-------AGUGCCG--UGCC- -5'
5562 3' -57.2 NC_001806.1 + 83886 0.67 0.84716
Target:  5'- uGCGCCCGUcuccugGACugcacgGAGgguCGGCGCGGg -3'
miRNA:   3'- cCGUGGGCG------UUG------CUCaguGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 103509 0.67 0.84716
Target:  5'- uGGCuCCCGCcggauccaAAUGAGUCuuCGGaccuCGCGGg -3'
miRNA:   3'- -CCGuGGGCG--------UUGCUCAGu-GCC----GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 23450 0.67 0.84716
Target:  5'- cGCccaGCCCGCGGCGccccGGgccgcCGCGGCGCaGGc -3'
miRNA:   3'- cCG---UGGGCGUUGC----UCa----GUGCCGUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 22133 0.67 0.84716
Target:  5'- gGGCGCCCGaGGCgGAGga--GGCGCGa -3'
miRNA:   3'- -CCGUGGGCgUUG-CUCagugCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 69057 0.67 0.84716
Target:  5'- cGCAgCCGCGAgGAGgugCGCGuGUcgACGGc -3'
miRNA:   3'- cCGUgGGCGUUgCUCa--GUGC-CG--UGCC- -5'
5562 3' -57.2 NC_001806.1 + 76385 0.67 0.84716
Target:  5'- cGCGCUgGUGGCGugcGUgGCGGCGCuGGa -3'
miRNA:   3'- cCGUGGgCGUUGCu--CAgUGCCGUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 147640 0.67 0.84716
Target:  5'- gGGCACaCgGC-GCGcGUcCGCGGgGCGGg -3'
miRNA:   3'- -CCGUG-GgCGuUGCuCA-GUGCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 100112 0.67 0.84716
Target:  5'- cGGCugaccGCCCGCcuGGCG-GUcCGCGGCuAUGGc -3'
miRNA:   3'- -CCG-----UGGGCG--UUGCuCA-GUGCCG-UGCC- -5'
5562 3' -57.2 NC_001806.1 + 56311 0.67 0.839273
Target:  5'- aGCACCUGCGccaACGAaauccaCACGGCACc- -3'
miRNA:   3'- cCGUGGGCGU---UGCUca----GUGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 43084 0.67 0.839273
Target:  5'- cGCACCCGUcggucgcauaaAGCGcGGUCACcucCACGGg -3'
miRNA:   3'- cCGUGGGCG-----------UUGC-UCAGUGcc-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 144799 0.67 0.839273
Target:  5'- aGGCcgcguacgGCCCGgGACGAGgggcccccgacCGCGGCGgucCGGg -3'
miRNA:   3'- -CCG--------UGGGCgUUGCUCa----------GUGCCGU---GCC- -5'
5562 3' -57.2 NC_001806.1 + 70829 0.67 0.839273
Target:  5'- cGGCgucugucgGCCUGCuauCaAGcCGCGGCGCGGc -3'
miRNA:   3'- -CCG--------UGGGCGuu-GcUCaGUGCCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.