miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 23286 0.69 0.72318
Target:  5'- gGGCGCaagCGCAA-GAGUCcCGGCcCGGc -3'
miRNA:   3'- -CCGUGg--GCGUUgCUCAGuGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 23330 0.72 0.554937
Target:  5'- cGGCgGCCCGCGacccccgaagACGAagaagaGCGGCGCGGa -3'
miRNA:   3'- -CCG-UGGGCGU----------UGCUcag---UGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 23450 0.67 0.84716
Target:  5'- cGCccaGCCCGCGGCGccccGGgccgcCGCGGCGCaGGc -3'
miRNA:   3'- cCG---UGGGCGUUGC----UCa----GUGCCGUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 24064 0.71 0.654262
Target:  5'- cGGCGCCCcCGACGuGUC--GGCGCuGGg -3'
miRNA:   3'- -CCGUGGGcGUUGCuCAGugCCGUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 24219 0.68 0.822969
Target:  5'- --gGCCCGcCGACGGGccCGCGGUgucGCGGc -3'
miRNA:   3'- ccgUGGGC-GUUGCUCa-GUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 24859 0.66 0.900625
Target:  5'- cGGCACCgugcuggcgGCGGCGGGggccguggaggugCugGGgGCGGa -3'
miRNA:   3'- -CCGUGGg--------CGUUGCUCa------------GugCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 24951 0.7 0.703736
Target:  5'- aGGCGCCUGgGACGAagacgacgGCGGCGCGu -3'
miRNA:   3'- -CCGUGGGCgUUGCUcag-----UGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 25930 0.67 0.831207
Target:  5'- cGCGCgCGCGGCGGGcgugggggCGgGGcCGCGGg -3'
miRNA:   3'- cCGUGgGCGUUGCUCa-------GUgCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 26814 0.68 0.797292
Target:  5'- uGCGCCUGCGACG---CGCGG-GCGGg -3'
miRNA:   3'- cCGUGGGCGUUGCucaGUGCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 26957 0.68 0.785756
Target:  5'- cGGcCGCCCGCcuGGCGcGcCGCGGCucgugggcccgcgaGCGGg -3'
miRNA:   3'- -CC-GUGGGCG--UUGCuCaGUGCCG--------------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 27992 0.69 0.761106
Target:  5'- cGGCACUCGgAGCGAGaCGCaGCAgccaggcagacuCGGg -3'
miRNA:   3'- -CCGUGGGCgUUGCUCaGUGcCGU------------GCC- -5'
5562 3' -57.2 NC_001806.1 + 29436 0.67 0.861627
Target:  5'- --gACCCGCAugGAggccgaggaggccGUCAgggcgGGCACGGc -3'
miRNA:   3'- ccgUGGGCGUugCU-------------CAGUg----CCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 29943 0.77 0.336766
Target:  5'- cGGCuCCCGCcagucGCGAGcCGCGGCgccGCGGg -3'
miRNA:   3'- -CCGuGGGCGu----UGCUCaGUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 30389 0.75 0.433786
Target:  5'- gGGCGCgUGCGACGGuGgcgCGCGGCuCGGg -3'
miRNA:   3'- -CCGUGgGCGUUGCU-Ca--GUGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 30843 0.69 0.751766
Target:  5'- cGGCcCCCGCGcUGcuUCugGGcCGCGGg -3'
miRNA:   3'- -CCGuGGGCGUuGCucAGugCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 31090 0.67 0.831207
Target:  5'- uGGCgACCCgGCuGCGGGcCGCGGUcccCGGc -3'
miRNA:   3'- -CCG-UGGG-CGuUGCUCaGUGCCGu--GCC- -5'
5562 3' -57.2 NC_001806.1 + 31293 0.68 0.788438
Target:  5'- cGGCACCCGUGGucCGGGgagCAgGGgGCGu -3'
miRNA:   3'- -CCGUGGGCGUU--GCUCa--GUgCCgUGCc -5'
5562 3' -57.2 NC_001806.1 + 32800 0.69 0.770337
Target:  5'- gGGCGCCCuCGACGAGUg--GGauaACGGg -3'
miRNA:   3'- -CCGUGGGcGUUGCUCAgugCCg--UGCC- -5'
5562 3' -57.2 NC_001806.1 + 33101 0.68 0.797292
Target:  5'- cGUGCCgGCgAGCGGGUC-CGG-ACGGg -3'
miRNA:   3'- cCGUGGgCG-UUGCUCAGuGCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 33366 0.66 0.86968
Target:  5'- gGGgGCCCGga--GAGcCGCGGCAccCGGa -3'
miRNA:   3'- -CCgUGGGCguugCUCaGUGCCGU--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.