miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 55475 0.79 0.271238
Target:  5'- uGCACCCGCGagccguaccgggccaAUGGGUCGCGGCggucgcaccacACGGg -3'
miRNA:   3'- cCGUGGGCGU---------------UGCUCAGUGCCG-----------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 151063 0.79 0.256546
Target:  5'- cGCACCCGCGcGgGGGUCGCGGggguCGCGGg -3'
miRNA:   3'- cCGUGGGCGU-UgCUCAGUGCC----GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 147717 0.79 0.250619
Target:  5'- cGGCGCUCGCAcgcACGGGgcCACGGCcgcGCGGg -3'
miRNA:   3'- -CCGUGGGCGU---UGCUCa-GUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 12440 0.79 0.239104
Target:  5'- aGGC-CCUGCAACGGGcggCACGGCAuccCGGa -3'
miRNA:   3'- -CCGuGGGCGUUGCUCa--GUGCCGU---GCC- -5'
5562 3' -57.2 NC_001806.1 + 139804 0.86 0.10026
Target:  5'- cGGCACCCGC-GCGA-UCAUGGUACGGg -3'
miRNA:   3'- -CCGUGGGCGuUGCUcAGUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 95676 0.74 0.460468
Target:  5'- uGCGCCCuGaCGGCGGG-CGCGgGCACGGu -3'
miRNA:   3'- cCGUGGG-C-GUUGCUCaGUGC-CGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 128567 0.74 0.469553
Target:  5'- gGGCGCggUCGUAGCGggaGGUCACGGCGCc- -3'
miRNA:   3'- -CCGUG--GGCGUUGC---UCAGUGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 22649 0.72 0.60436
Target:  5'- cGGUGCCCGC--CGGG-UACGGCgccGCGGg -3'
miRNA:   3'- -CCGUGGGCGuuGCUCaGUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 3449 0.72 0.60436
Target:  5'- aGGCACUcgacggccaCGCGGCcGGcCugGGCGCGGc -3'
miRNA:   3'- -CCGUGG---------GCGUUGcUCaGugCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 140689 0.72 0.584487
Target:  5'- cGGCGCCCGCGugccgcgcuggaACGcccccGUCuguggUGGCGCGGg -3'
miRNA:   3'- -CCGUGGGCGU------------UGCu----CAGu----GCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 79559 0.72 0.584487
Target:  5'- gGGCcCCCGCGACGAcUUcCGGCGCu- -3'
miRNA:   3'- -CCGuGGGCGUUGCUcAGuGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 4710 0.72 0.564744
Target:  5'- cGCGCCgCGUAGCGGGgccucccguUCGCGGCccCGGg -3'
miRNA:   3'- cCGUGG-GCGUUGCUC---------AGUGCCGu-GCC- -5'
5562 3' -57.2 NC_001806.1 + 61764 0.72 0.564744
Target:  5'- cGCACCCGCGcuuccaACcAGUCcaccuUGGCGCGGa -3'
miRNA:   3'- cCGUGGGCGU------UGcUCAGu----GCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 41361 0.72 0.563762
Target:  5'- cGGCAUCCaggccgccaggggGCAucACGGGgccCugGGCGCGGa -3'
miRNA:   3'- -CCGUGGG-------------CGU--UGCUCa--GugCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 148169 0.72 0.554937
Target:  5'- cGGCGCCUcuGCGugGGGgggCGCGGgGCGu -3'
miRNA:   3'- -CCGUGGG--CGUugCUCa--GUGCCgUGCc -5'
5562 3' -57.2 NC_001806.1 + 23330 0.72 0.554937
Target:  5'- cGGCgGCCCGCGacccccgaagACGAagaagaGCGGCGCGGa -3'
miRNA:   3'- -CCG-UGGGCGU----------UGCUcag---UGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 78634 0.73 0.525842
Target:  5'- cGCAccCCCGCGGCGcgcGUUACGGcCAUGGa -3'
miRNA:   3'- cCGU--GGGCGUUGCu--CAGUGCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 74478 0.73 0.516269
Target:  5'- aGGCGCgCCGCAGCucGGGUCuggccgagcuGCGGCGCu- -3'
miRNA:   3'- -CCGUG-GGCGUUG--CUCAG----------UGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 123122 0.73 0.506767
Target:  5'- cGCACaCCGgGugGCGGGUCGCGGCGgCGa -3'
miRNA:   3'- cCGUG-GGCgU--UGCUCAGUGCCGU-GCc -5'
5562 3' -57.2 NC_001806.1 + 52051 0.74 0.473213
Target:  5'- aGGCGCCCGCGgaaacguucGCGcgccaucuggaccggGGUCccaGCGGCACGa -3'
miRNA:   3'- -CCGUGGGCGU---------UGC---------------UCAG---UGCCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.